Pyridoxal 5′-Phosphate-Dependent Enzymatic Decarboxylative Annulation

Pyridoxal 5'-phosphate (PLP)-dependent enzymes are among the most versatile biocatalysts, yet transformations involving the Cγ-nucleophilic vinylglycine quinonoid (VGQ) intermediate remain exceptionally rare. Understanding the untapped reactivity of VGQ could open new avenues for developing PLP-dependent biocatalysts. Here, we establish a biocatalytic platform that artificially accesses and exploits the reactivity of this high-energy intermediate. By reprogramming SphA, a PLP-dependent enzyme that natively catalyzes decarboxylative Claisen condensation, to generate VGQ <i>in situ</i> through facile decarboxylation of vinylaminomalonate, we enable a decarboxylative [3 + 2] annulation between vinylaminomalonate and electron-deficient alkenes. Crystallographic, computational, and mutagenesis studies reveal the key mechanistic features underlying this abiotic transformation. Our findings demonstrate the latent [3 + 2] annulating potential of VGQ and expand the catalytic repertoire of PLP-dependent enzymes, establishing a new strategy for the enzymatic construction of complex carbocyclic architectures.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2026-03-02
DOI
https://doi.org/10.1021/jacs.5c20979
Primary Topic
Enzyme Structure and Function
Type
article
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article

Pyridoxal 5′-Phosphate-Dependent Enzymatic Decarboxylative Annulation

Shenggan Luo, Yike Zou, He Xu, Weiwei Chai et al.
Journal of the American Chemical Society
Enzyme Structure and Function
article

Pyridoxal 5′-Phosphate-Dependent Enzymatic Decarboxylative Annulation

Shenggan Luo, Yike Zou, He Xu, Weiwei Chai, Ting Zhang, Yang Hai, Wenhui Xi
article en

Abstract

Pyridoxal 5'-phosphate (PLP)-dependent enzymes are among the most versatile biocatalysts, yet transformations involving the Cγ-nucleophilic vinylglycine quinonoid (VGQ) intermediate remain exceptionally rare. Understanding the untapped reactivity of VGQ could open new avenues for developing PLP-dependent biocatalysts. Here, we establish a biocatalytic platform that artificially accesses and exploits the reactivity of this high-energy intermediate. By reprogramming SphA, a PLP-dependent enzyme that natively catalyzes decarboxylative Claisen condensation, to generate VGQ <i>in situ</i> through facile decarboxylation of vinylaminomalonate, we enable a decarboxylative [3 + 2] annulation between vinylaminomalonate and electron-deficient alkenes. Crystallographic, computational, and mutagenesis studies reveal the key mechanistic features underlying this abiotic transformation. Our findings demonstrate the latent [3 + 2] annulating potential of VGQ and expand the catalytic repertoire of PLP-dependent enzymes, establishing a new strategy for the enzymatic construction of complex carbocyclic architectures.

Journal of the American Chemical SocietyVol. 148(9)
University of California, Santa Barbara (US), Shanghai Jiao Tong University (CN), Institute for Advanced Study (DE)
Openalex Percentile: Top 40%
Enzyme Structure and Function
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