Characterization of Integrative and Conjugative Elements Carrying <i>bla</i><sub>NDM-1</sub> and <i>bla</i><sub>KPC-2</sub> in an Environmental <i>Pseudomonas guariconensis</i> Isolate
Urban wastewater is increasingly recognized as a major reservoir of antimicrobial resistance and horizontal gene transfer. From urban wastewater in Hanoi, Vietnam, we isolated a multidrug-resistant Pseudomonas guariconensis strain, KNHN1, resistant to most antimicrobials, including carbapenems and cephalosporins, but susceptible to cefiderocol; and intermediate to colistin. Whole-genome sequencing revealed two chromosomally integrated integrative and conjugative elements (ICEs): ICE<sub>PgKNHN1_KPC</sub> (131 kb) carrying bla<sub>KPC-2</sub> and ICE<sub>PgKNHN1_NDM</sub> (108 kb), carrying bla<sub>NDM-1</sub>, both flanked by conserved 18-bp att sites in the tRNA<sup>Gly</sup> loci and encoding MOB<sub>H-</sub>type relaxases. Polymerase chain reaction and subsequent sequencing confirmed ICE excision from the chromosome and formation of circular intermediates. Conjugation to Pseudomonas putida KT2440 occurred at ~10⁻² frequency, producing transconjugants with ICE<sub>PgKNHN1_NDM</sub> (~85%), ICE<sub>PgKNHN1_KPC</sub> (~10%), or both, all showing broad range β-lactam resistance. Comparative analysis indicated that ICE<sub>PgKNHN1_NDM</sub> has a highly conserved backbone across multiple species and often co-carries bla<sub>PME-1</sub> and other resistance genes. To our knowledge, this is the first report of chromosomally integrated bla<sub>NDM‑1</sub> and bla<sub>KPC‑2</sub> in P. guariconensis mediated by functional ICEs. These findings underscore the pivotal role of environmental bacteria as reservoirs of clinically significant resistance genes, and highlight ICEs as key drivers in the dissemination of carbapenem resistance.
Authors
- Aki Hirabayashi (ORCID: https://orcid.org/0000-0003-3115-0645)
- Hoang Huy Tran (ORCID: https://orcid.org/0000-0002-0351-3712)
- Haruka Abe (ORCID: https://orcid.org/0000-0003-0141-5059)
- Ikuro Kasuga (ORCID: https://orcid.org/0000-0003-4392-3756)
- Taichiro Takemura
- Futoshi Hasebe (ORCID: https://orcid.org/0000-0002-2573-3302)
- Keigo Shibayama
- Masato Suzuki
- Yohei Kobayashi (ORCID: https://orcid.org/0009-0002-5433-4009)
- Duc Trung Dao
Institutions
- National Institute of Infectious Diseases (JP)
- National Institute Of Hygiene And Epidemiology (VN)
- Nagoya Industrial Science Research Institute (JP)
- Nagasaki University (JP)
- Nagoya University (JP)
- The University of Tokyo (JP)
Publication Details
- Journal
- Japanese Journal of Infectious Diseases
- Published
- 2026-02-26
- DOI
- https://doi.org/10.7883/yoken.jjid.2025.255
- Primary Topic
- Microbial bioremediation and biosurfactants
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Ohsumi Frontier Science Foundation