Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism

Rawsamble is available at https://github.com/CMU-SAFARI/RawHash. We also provide the scripts to fully reproduce our results on our GitHub page.

Authors

Harun Mustafa (ORCID: https://orcid.org/0000-0002-2125-6086)
Joël Lindegger (ORCID: https://orcid.org/0000-0003-2581-8637)
Maximilian Mordig (ORCID: https://orcid.org/0000-0002-5731-484X)
André Kahles (ORCID: https://orcid.org/0000-0002-3411-0692)
Stefano Mercogliano
Furkan Eris (ORCID: https://orcid.org/0009-0007-4503-6073)
Nika Mansouri Ghiasi
Can Firtina
Onur Mutlu
Sayan Goswami

Institutions

University of Maryland, Baltimore (US)
SIB Swiss Institute of Bioinformatics (CH)
ETH Zurich (CH)
University Hospital of Zurich (CH)
Max Planck Institute for Intelligent Systems (DE)
University of Maryland, College Park (US)

Publication Details

Journal: Bioinformatics
Published: 2026-02-25
DOI: https://doi.org/10.1093/bioinformatics/btag087
Primary Topic: Nanopore and Nanochannel Transport Studies
Type: article
Field-Weighted Citation Impact: 0.00

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article

Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism

Harun Mustafa, Joël Lindegger, Maximilian Mordig, André Kahles et al.

Feb 25, 2026

Bioinformatics

Nanopore and Nanochannel Transport Studies

article

Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism

Harun Mustafa, Joël Lindegger, Maximilian Mordig, André Kahles, Stefano Mercogliano, Furkan Eris, Nika Mansouri Ghiasi, Can Firtina, Onur Mutlu, Sayan Goswami

February 25, 2026article en

Abstract

Rawsamble is available at https://github.com/CMU-SAFARI/RawHash. We also provide the scripts to fully reproduce our results on our GitHub page.

BioinformaticsVol. 42(3)

University of Maryland, Baltimore (US), SIB Swiss Institute of Bioinformatics (CH), ETH Zurich (CH), University Hospital of Zurich (CH), Max Planck Institute for Intelligent Systems (DE), University of Maryland, College Park (US)

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Openalex Percentile: Top 43%

Nanopore and Nanochannel Transport Studies

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