Chromosome-level genome of the bank vole (Clethrionomys glareolus): a resource for eco-evo-disease research

The increasing availability of reference genomes for non-traditional model species is enhancing research in ecology and evolution. Here, we present a high-quality chromosome-level genome assembly and annotation for the bank vole Clethrionomys glareolus, an emerging model mammal. The 2.24 Gb assembly is resolved into 28 chromosome-scale scaffolds, consistent with the known karyotype of the species. We predicted 40,393 gene loci, including 21,029 protein-coding genes supported by Swiss-Prot homology. Repetitive elements account for approximately 29% of the genome. The assembly achieves a 90.6% BUSCO score, underscoring its completeness. Compared to previously available fragmented assemblies, this genome enables investigation of genome architecture, selection and structural variation at unprecedented resolution. In particular, this chromosome-level resource supports research into ecological and evolutionary responses to climate variation across space and time. It also holds value for other fields, including developmental biology and studies of immunology and virology, where the bank vole is used as a model for host-pathogen interactions-expanding the relevance of this genomic resource across biological disciplines.

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Publication Details

Journal
Scientific Data
Published
2026-02-26
DOI
https://doi.org/10.1038/s41597-026-06924-x
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
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article

Chromosome-level genome of the bank vole (Clethrionomys glareolus): a resource for eco-evo-disease research

Thomas A. White, Jeremy B. Searle, Petr Kotlik, Silvia Marková
Scientific Data
Genomics and Phylogenetic Studies
article

Chromosome-level genome of the bank vole (Clethrionomys glareolus): a resource for eco-evo-disease research

Thomas A. White, Jeremy B. Searle, Petr Kotlik, Silvia Marková
article en

Abstract

The increasing availability of reference genomes for non-traditional model species is enhancing research in ecology and evolution. Here, we present a high-quality chromosome-level genome assembly and annotation for the bank vole Clethrionomys glareolus, an emerging model mammal. The 2.24 Gb assembly is resolved into 28 chromosome-scale scaffolds, consistent with the known karyotype of the species. We predicted 40,393 gene loci, including 21,029 protein-coding genes supported by Swiss-Prot homology. Repetitive elements account for approximately 29% of the genome. The assembly achieves a 90.6% BUSCO score, underscoring its completeness. Compared to previously available fragmented assemblies, this genome enables investigation of genome architecture, selection and structural variation at unprecedented resolution. In particular, this chromosome-level resource supports research into ecological and evolutionary responses to climate variation across space and time. It also holds value for other fields, including developmental biology and studies of immunology and virology, where the bank vole is used as a model for host-pathogen interactions-expanding the relevance of this genomic resource across biological disciplines.

Scientific Data
Cornell University (US), Czech Academy of Sciences, Institute of Animal Physiology and Genetics (CZ)
Climate action
Openalex Percentile: Top 41%
Genomics and Phylogenetic Studies
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