Confirming the Absolute Configuration of (−)-Licarin-A and (−)-Licarin-B by Vibrational Circular Dichroism and X-ray Crystallography

Plants biosynthesize complex asymmetric molecules that often contain various chiral centers in their structure, making the determination of their absolute configuration an important topic. Within the <i>Aristolochia</i> genus, licarins such as licarin-A and licarin-B have been isolated, and their chemical structures are well known. However, ambiguities persist regarding their absolute stereochemical assignments, which in most cases are reported solely based on the optical rotation and comparison with previous reports. In the present work, the absolute configurations of the neolignans (-)-(2<i>R</i>,3<i>R</i>)-licarin-A and (-)-(2<i>R</i>,3<i>R</i>)-licarin-B, isolated from <i>Aristolochia glossa</i> Pfeifer, were determined by X-ray diffraction analysis and vibrational circular dichroism (VCD) spectroscopy, employing density functional theory (DFT) calculations at the B3LYP/DGDZVP level of theory for the construction of the theoretical VCD spectra. Furthermore, the enantiomeric purity of both molecules was confirmed to be 100% by using the Flack parameter. Based on these results and the maximum optical rotation values obtained, this study provides solid and definitive evidence for the stereochemical assignment of licarins A and B, which should be considered in future reports. These structures are widely employed in synthetic and medicinal chemistry, where identifying the biologically active compound correlated to the correct stereoisomer is essential.

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Journal
Journal of Natural Products
Published
2026-02-25
DOI
https://doi.org/10.1021/acs.jnatprod.5c01490
Primary Topic
Glycosylation and Glycoproteins Research
Type
article
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article

Confirming the Absolute Configuration of (−)-Licarin-A and (−)-Licarin-B by Vibrational Circular Dichroism and X-ray Crystallography

Martín A. Lerma-Herrera, Judit A. Aviña‐Verduzco, Hugo A. García‐Gutiérrez, Julio C. Ontiveros‐Rodríguez et al.
Journal of Natural Products
Glycosylation and Glycoproteins Research
article

Confirming the Absolute Configuration of (−)-Licarin-A and (−)-Licarin-B by Vibrational Circular Dichroism and X-ray Crystallography

Martín A. Lerma-Herrera, Judit A. Aviña‐Verduzco, Hugo A. García‐Gutiérrez, Julio C. Ontiveros‐Rodríguez, Carlos M. Cerda-Garcia-Rojas, Verónica Cortés-Muñoz, Perla Guillen-Heredia, Lidia Beiza-Granados, Luis Prado-Villanueva
article en

Abstract

Plants biosynthesize complex asymmetric molecules that often contain various chiral centers in their structure, making the determination of their absolute configuration an important topic. Within the <i>Aristolochia</i> genus, licarins such as licarin-A and licarin-B have been isolated, and their chemical structures are well known. However, ambiguities persist regarding their absolute stereochemical assignments, which in most cases are reported solely based on the optical rotation and comparison with previous reports. In the present work, the absolute configurations of the neolignans (-)-(2<i>R</i>,3<i>R</i>)-licarin-A and (-)-(2<i>R</i>,3<i>R</i>)-licarin-B, isolated from <i>Aristolochia glossa</i> Pfeifer, were determined by X-ray diffraction analysis and vibrational circular dichroism (VCD) spectroscopy, employing density functional theory (DFT) calculations at the B3LYP/DGDZVP level of theory for the construction of the theoretical VCD spectra. Furthermore, the enantiomeric purity of both molecules was confirmed to be 100% by using the Flack parameter. Based on these results and the maximum optical rotation values obtained, this study provides solid and definitive evidence for the stereochemical assignment of licarins A and B, which should be considered in future reports. These structures are widely employed in synthetic and medicinal chemistry, where identifying the biologically active compound correlated to the correct stereoisomer is essential.

Journal of Natural ProductsVol. 89(3)
Universidad Michoacana de San Nicolás de Hidalgo (MX), Instituto Politécnico Nacional (MX), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (MX)
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Openalex Percentile: Top 42%
Glycosylation and Glycoproteins Research
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