An alternative technique for organelle genome recovery in diatoms using culture-independent, minimal-cell whole genome amplification
Using mcWGA approach, we successfully obtained the complete chloroplasts and mitochondrial genomes of <i>C. clypeus</i> and <i>P. lepidoptera</i> using only 8-12 viable cells isolated from fresh environmental samples. The plastome size of <i>C. clypeus</i> was 143,367 bp and mitogenome size was 46,274 bp, while <i>P. lepidoptera</i> has plastome and mitogenome sizes of 116,161 bp and 49,356 bp, respectively. The data generated provides a valuable resource for further research, highlighting the importance of culture-independent techniques in microbial genomics.
Authors
- Aimee Caye G. Chang (ORCID: https://orcid.org/0000-0002-4211-3930)
- Megan Greenwood (ORCID: https://orcid.org/0009-0005-8965-2041)
- Kyle G. Keepers (ORCID: https://orcid.org/0000-0002-2288-8018)
- Sarah E. Hamsher (ORCID: https://orcid.org/0000-0002-5748-9770)
- Catherine Ikudaisi
- Jingchun Li
- Scott R. Miller
- Mailor W.W. Amaral
- John Patrick Kociolek
Institutions
- Museum of Boulder (US)
- University of Montana (US)
- University of Santo Tomas (PH)
- Grand Valley State University (US)
Publication Details
- Journal
- PeerJ
- Published
- 2026-02-25
- DOI
- https://doi.org/10.7717/peerj.20767
- Primary Topic
- Diatoms and Algae Research
- Type
- article
- Field-Weighted Citation Impact
- 0.00