An alternative technique for organelle genome recovery in diatoms using culture-independent, minimal-cell whole genome amplification

Using mcWGA approach, we successfully obtained the complete chloroplasts and mitochondrial genomes of <i>C. clypeus</i> and <i>P. lepidoptera</i> using only 8-12 viable cells isolated from fresh environmental samples. The plastome size of <i>C. clypeus</i> was 143,367 bp and mitogenome size was 46,274 bp, while <i>P. lepidoptera</i> has plastome and mitogenome sizes of 116,161 bp and 49,356 bp, respectively. The data generated provides a valuable resource for further research, highlighting the importance of culture-independent techniques in microbial genomics.

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Publication Details

Journal
PeerJ
Published
2026-02-25
DOI
https://doi.org/10.7717/peerj.20767
Primary Topic
Diatoms and Algae Research
Type
article
Field-Weighted Citation Impact
0.00
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article

An alternative technique for organelle genome recovery in diatoms using culture-independent, minimal-cell whole genome amplification

Aimee Caye G. Chang, Megan Greenwood, Kyle G. Keepers, Sarah E. Hamsher et al.
PeerJ
Diatoms and Algae Research
article

An alternative technique for organelle genome recovery in diatoms using culture-independent, minimal-cell whole genome amplification

Aimee Caye G. Chang, Megan Greenwood, Kyle G. Keepers, Sarah E. Hamsher, Catherine Ikudaisi, Jingchun Li, Scott R. Miller, Mailor W.W. Amaral, John Patrick Kociolek
article en

Abstract

Using mcWGA approach, we successfully obtained the complete chloroplasts and mitochondrial genomes of <i>C. clypeus</i> and <i>P. lepidoptera</i> using only 8-12 viable cells isolated from fresh environmental samples. The plastome size of <i>C. clypeus</i> was 143,367 bp and mitogenome size was 46,274 bp, while <i>P. lepidoptera</i> has plastome and mitogenome sizes of 116,161 bp and 49,356 bp, respectively. The data generated provides a valuable resource for further research, highlighting the importance of culture-independent techniques in microbial genomics.

PeerJVol. 14
Museum of Boulder (US), University of Montana (US), University of Santo Tomas (PH), Grand Valley State University (US)
Openalex Percentile: Top 44%
Diatoms and Algae Research
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