You Only Look Once (YOLO) based machine learning algorithm for real-time detection of loop-mediated isothermal amplification (LAMP) diagnostics

Loop-mediated isothermal amplification (LAMP) is a widely used rapid and affordable molecular DNA amplification method with minimal resource requirements. However, visual interpretation of results is subjective and prone to errors, leading to potential false-positive and negative results. To address this limitation, a machine-learning approach is proposed for automated LAMP classification based on digital images. The approach utilizes You Only Look Once (YOLOv8), a fast and robust object detection algorithm to locate and classify tubes within LAMP images, enabling automated categorization as positive or negative. The trained model achieved a high overall accuracy of 97.4% in classifying LAMP images into positive or negative on the test set. Additionally, the approach had a 95.3% precision and 96.8% recall for positive cases and 93.3% precision and 95.8% recall for negative cases, demonstrating its potential for real-time LAMP diagnosis and enhanced assay performance. This project demonstrated platform suitability for real-time testing, offering an easy operation and rapid results.

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Publication Details

Journal
PLoS ONE
Published
2026-02-24
DOI
https://doi.org/10.1371/journal.pone.0339042
Primary Topic
Biosensors and Analytical Detection
Type
article
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article

You Only Look Once (YOLO) based machine learning algorithm for real-time detection of loop-mediated isothermal amplification (LAMP) diagnostics

Bogdan Iuliu Iorga, Biniyam Kahsay Mezgebo, Johann D. D. Pitout, S. Ashraf et al.
PLoS ONE
Biosensors and Analytical Detection
article

You Only Look Once (YOLO) based machine learning algorithm for real-time detection of loop-mediated isothermal amplification (LAMP) diagnostics

Bogdan Iuliu Iorga, Biniyam Kahsay Mezgebo, Johann D. D. Pitout, S. Ashraf, Dylan R. Pillai, J. Burke-Gaffney, M. Ethan MacDonald, L. Ricardo Castellanos, Ryan Chaffee
article en

Abstract

Loop-mediated isothermal amplification (LAMP) is a widely used rapid and affordable molecular DNA amplification method with minimal resource requirements. However, visual interpretation of results is subjective and prone to errors, leading to potential false-positive and negative results. To address this limitation, a machine-learning approach is proposed for automated LAMP classification based on digital images. The approach utilizes You Only Look Once (YOLOv8), a fast and robust object detection algorithm to locate and classify tubes within LAMP images, enabling automated categorization as positive or negative. The trained model achieved a high overall accuracy of 97.4% in classifying LAMP images into positive or negative on the test set. Additionally, the approach had a 95.3% precision and 96.8% recall for positive cases and 93.3% precision and 95.8% recall for negative cases, demonstrating its potential for real-time LAMP diagnosis and enhanced assay performance. This project demonstrated platform suitability for real-time testing, offering an easy operation and rapid results.

PLoS ONEVol. 21(2)
Centre National de la Recherche Scientifique (FR), Institut de Chimie des Substances Naturelles (FR), University of Calgary (CA), Université Paris-Saclay (FR), Alberta Children's Hospital (CA), Ross University School of Veterinary Medicine (KN), Calgary Laboratory Services (CA), Hotchkiss Brain Institute (CA)
Openalex Percentile: Top 46%
Biosensors and Analytical Detection
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