CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for <i>Chlamydia trachomatis</i>

We present <i>Chlamydia trachomatis</i> Genome Assembly Pipeline (CtGAP) 2.0, an enhanced version of CtGAP, that provides a seamless installation process-eliminating the need for multiple standalone tools-and a streamlined command-line interface, introduces automatic assembly quality scoring and selection for downstream analyses, and integrates chromosome and plasmid typing along with phylogenomics.

Authors

Institutions

Publication Details

Journal
Microbiology Resource Announcements
Published
2026-02-24
DOI
https://doi.org/10.1128/mra.01470-25
Primary Topic
Reproductive tract infections research
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis

Olusola Olagoke, Timothy D. Read, Deborah Dean
Microbiology Resource Announcements
Reproductive tract infections research
article

CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis

Olusola Olagoke, Timothy D. Read, Deborah Dean
article en

Abstract

We present <i>Chlamydia trachomatis</i> Genome Assembly Pipeline (CtGAP) 2.0, an enhanced version of CtGAP, that provides a seamless installation process-eliminating the need for multiple standalone tools-and a streamlined command-line interface, introduces automatic assembly quality scoring and selection for downstream analyses, and integrates chromosome and plasmid typing along with phylogenomics.

Microbiology Resource AnnouncementsVol. 15(3)
Emory University (US), University of California, San Francisco (US), University of California System (US), UCSF Benioff Children's Hospital (US), Global Brain Health Institute (US), Global Solutions for Infectious Diseases (US), University of California, Berkeley (US)
Life below water
Openalex Percentile: Top 45%
Reproductive tract infections research
DOIOpen Access PDFOpenAlex
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.