Configurational entropy of randomly double-folding ring polymers
Topologically constrained genome-like polymers often double-fold into tree-like configurations. Here, we calculate the exact number of tightly double-folded configurations available to a ring polymer in ideal conditions. For this purpose, we introduce a scheme that allows us to define a "code" specifying how a ring wraps a randomly branching tree and calculate the number of admissible wrapping codes via a variant of Bertrand's ballot theorem. As a validation, we demonstrate that data from Monte Carlo simulations of an elastic lattice model of non-interacting tightly double-folded rings with controlled branching activity are in excellent agreement with exact expressions for branch-node and tree size statistics that can be derived from our expression for the ring entropy.
Authors
- Angelo Rosa (ORCID: https://orcid.org/0000-0002-9627-2486)
- Elham Ghobadpour (ORCID: https://orcid.org/0000-0002-0497-2208)
- Pieter H. W. van der Hoek (ORCID: https://orcid.org/0009-0001-1527-3840)
Institutions
- École Normale Supérieure de Lyon (FR)
- Centre National de la Recherche Scientifique (FR)
- Scuola Internazionale Superiore di Studi Avanzati (IT)
- Laboratoire de Physique de l'ENS de Lyon (FR)
Publication Details
- Journal
- The Journal of Chemical Physics
- Published
- 2026-02-23
- DOI
- https://doi.org/10.1063/5.0318212
- Primary Topic
- Protein Structure and Dynamics
- Type
- article
- Field-Weighted Citation Impact
- 0.00