Benchmarking of vibrational exciton models against quantum-chemical localized-mode calculations

Vibrational exciton models are widely used for the simulation of biomolecular vibrational spectra, particularly two-dimensional infrared spectra. The parameters entering such models, specifically harmonic local-mode frequencies and harmonic coupling constants, are provided by vibrational maps, which have been parameterized against computational data for small molecules as well as experimental data. Here, we put forward a novel approach for assessing the quality of these harmonic vibrational maps against quantum-chemical reference data. For a test set consisting of molecular dynamics snapshots of polypeptides and small proteins, covering different secondary structure motifs, we performed full quantum-chemical calculations of harmonic vibrational frequencies and normal modes and applied a localization of normal modes to obtain localized-mode frequencies and coupling constants. These can be directly compared to those predicted by vibrational maps. We find that while there is a good correlation for the coupling constants and for local-mode frequencies of isolated polypeptides, there is hardly any correlation for the local-mode frequencies of solvated polypeptides. This striking finding calls into question the accuracy of the electrostatic maps that are used to model the effect of the solvent molecules on local-mode frequencies.

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Publication Details

Journal
The Journal of Chemical Physics
Published
2026-02-23
DOI
https://doi.org/10.1063/5.0322117
Primary Topic
Spectroscopy and Quantum Chemical Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

Benchmarking of vibrational exciton models against quantum-chemical localized-mode calculations

Mario Wolter, Christoph R. Jacob, Kevin Focke, Anna Maria Van Bodegraven
The Journal of Chemical Physics
Spectroscopy and Quantum Chemical Studies
article

Benchmarking of vibrational exciton models against quantum-chemical localized-mode calculations

Mario Wolter, Christoph R. Jacob, Kevin Focke, Anna Maria Van Bodegraven
article en

Abstract

Vibrational exciton models are widely used for the simulation of biomolecular vibrational spectra, particularly two-dimensional infrared spectra. The parameters entering such models, specifically harmonic local-mode frequencies and harmonic coupling constants, are provided by vibrational maps, which have been parameterized against computational data for small molecules as well as experimental data. Here, we put forward a novel approach for assessing the quality of these harmonic vibrational maps against quantum-chemical reference data. For a test set consisting of molecular dynamics snapshots of polypeptides and small proteins, covering different secondary structure motifs, we performed full quantum-chemical calculations of harmonic vibrational frequencies and normal modes and applied a localization of normal modes to obtain localized-mode frequencies and coupling constants. These can be directly compared to those predicted by vibrational maps. We find that while there is a good correlation for the coupling constants and for local-mode frequencies of isolated polypeptides, there is hardly any correlation for the local-mode frequencies of solvated polypeptides. This striking finding calls into question the accuracy of the electrostatic maps that are used to model the effect of the solvent molecules on local-mode frequencies.

The Journal of Chemical PhysicsVol. 164(8)
Technische Universität Braunschweig (DE)
Openalex Percentile: Top 45%
Spectroscopy and Quantum Chemical Studies
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