INFO GRAB: An interactive shiny application for gene expression analysis and visualization

INFO GRAB is an interactive Shiny application designed for efficient exploration and visualization of gene expression data from chicken tissues and cell types. It integrates differential expression, tissue-specific expression, and allele-specific expression functionalities, supported by advanced plotting features, such as volcano plots, heatmaps, PCA, and correlation, as well as an embedded genome viewer. By leveraging DESeq2, Tau-based metrics, and curated multi-omic data, INFO GRAB provides a streamlined, user-friendly approach to large-scale transcriptomic analyses. This tool empowers researchers to investigate regulatory mechanisms and complex genetic traits, advancing poultry genomics and related biological research.

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Publication Details

Journal
Genomics
Published
2026-02-23
DOI
https://doi.org/10.1016/j.ygeno.2026.111222
Primary Topic
Gene expression and cancer classification
Type
article
Field-Weighted Citation Impact
0.00
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article

INFO GRAB: An interactive shiny application for gene expression analysis and visualization

Andressa Oliveira de Lima, Oliver Brown, Yvonne Drechsler, R. David Hawkins
Genomics
Gene expression and cancer classification
article

INFO GRAB: An interactive shiny application for gene expression analysis and visualization

Andressa Oliveira de Lima, Oliver Brown, Yvonne Drechsler, R. David Hawkins
article en

Abstract

INFO GRAB is an interactive Shiny application designed for efficient exploration and visualization of gene expression data from chicken tissues and cell types. It integrates differential expression, tissue-specific expression, and allele-specific expression functionalities, supported by advanced plotting features, such as volcano plots, heatmaps, PCA, and correlation, as well as an embedded genome viewer. By leveraging DESeq2, Tau-based metrics, and curated multi-omic data, INFO GRAB provides a streamlined, user-friendly approach to large-scale transcriptomic analyses. This tool empowers researchers to investigate regulatory mechanisms and complex genetic traits, advancing poultry genomics and related biological research.

GenomicsVol. 118(2)
University of Washington (US), Western University of Health Sciences (US)
Openalex Percentile: Top 45%
Gene expression and cancer classification
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