Repression of miR-29 via MYC leads to increased CD40 signaling in transformed follicular lymphoma

Follicular lymphoma (FL) patients are at risk of disease transformation to aggressive high-grade lymphoma (tFL). While several genetic alterations have been implicated in tFL, the role of microenvironmental interactions and post-transcriptional regulation by non-coding RNAs remains poorly understood. We performed the first matched profiling of mRNAs and short non-coding RNAs (miRNAs) in paired FL and tFL samples (n = 11 pairs). This revealed differential expression of 1,075 mRNAs and 19 miRNAs, including repression of miR-29 family in tFL (miR-29a/b/c). Further analysis uncovered that MYC directly transcriptionally represses miR-29 in tFL, resulting in the upregulation of its target TRAF4. TRAF4 upregulation contributes to CD40 signaling being strongly activated in tFL and supports malignant B-cell proliferation. Notably, this increased CD40 pathway activity in 90% of tFL and contrasted with the reduced T-cell numbers in tFL niches. Thus, the MYC-miR-29-TRAF4 axis and increased CD40 signaling propensity may serve as tFL cells' adaptation to reduced numbers of CD40L+ T-cells. Moreover, lower levels of all miR-29s(a/b/c) were associated with shorter overall survival (OS) and progression-free survival in FL (n = 185), including in a multivariate analysis. Low miR-29c was also associated with shorter OS in a validation cohort (n = 92) from the first-line R-CHOP therapy clinical trial (SWOG S0016, NCT00006721).

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Journal
Leukemia
Published
2026-02-19
DOI
https://doi.org/10.1038/s41375-026-02868-8
Primary Topic
Lymphoma Diagnosis and Treatment
Type
article
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article

Repression of miR-29 via MYC leads to increased CD40 signaling in transformed follicular lymphoma

Pedro Faria Zeni, Kateřina Kamarádová, Václav Šeda, Andrea Marečková et al.
Leukemia
Lymphoma Diagnosis and Treatment
article

Repression of miR-29 via MYC leads to increased CD40 signaling in transformed follicular lymphoma

Pedro Faria Zeni, Kateřina Kamarádová, Václav Šeda, Andrea Marečková, Daniel Filip, Alice Šýkorová, Marek Mráz, Milan Urík, Nicolas Blavet, Andrea Janíková, Václav Hejret, Zuzana Prouzová, Katerina Musilova Litzmanova, Miroslav Boudný, Jan Oppelt, Filip Kledus, Lisa M. Rimsza, Androniki Michaelou, Heike Horn, German Ott, Jonathan W. Friedberg, Marek Trneny, Kvetoslava Matulova, Alexey Danilov, Andrew G. Evans, Marek Borsky, Jan Devan, David Belada, Sonali Sharma, Leos Kren, Eva Hoferkova, Philipp Staber, Heidi Mocikova, Jiri Mayer
article en

Abstract

Follicular lymphoma (FL) patients are at risk of disease transformation to aggressive high-grade lymphoma (tFL). While several genetic alterations have been implicated in tFL, the role of microenvironmental interactions and post-transcriptional regulation by non-coding RNAs remains poorly understood. We performed the first matched profiling of mRNAs and short non-coding RNAs (miRNAs) in paired FL and tFL samples (n = 11 pairs). This revealed differential expression of 1,075 mRNAs and 19 miRNAs, including repression of miR-29 family in tFL (miR-29a/b/c). Further analysis uncovered that MYC directly transcriptionally represses miR-29 in tFL, resulting in the upregulation of its target TRAF4. TRAF4 upregulation contributes to CD40 signaling being strongly activated in tFL and supports malignant B-cell proliferation. Notably, this increased CD40 pathway activity in 90% of tFL and contrasted with the reduced T-cell numbers in tFL niches. Thus, the MYC-miR-29-TRAF4 axis and increased CD40 signaling propensity may serve as tFL cells' adaptation to reduced numbers of CD40L+ T-cells. Moreover, lower levels of all miR-29s(a/b/c) were associated with shorter overall survival (OS) and progression-free survival in FL (n = 185), including in a multivariate analysis. Low miR-29c was also associated with shorter OS in a validation cohort (n = 92) from the first-line R-CHOP therapy clinical trial (SWOG S0016, NCT00006721).

Leukemia
Central European Institute of Technology (CZ), University of Arizona (US), Charles University (CZ), Masaryk University (CZ), Robert Bosch Hospital (DE), Central European Institute of Technology – Masaryk University (CZ), University Hospital Brno (CZ), City of Hope (US), Central European Institute of Technology (AT), Dr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology (DE), Mayo Clinic in Arizona (US), University Hospital Hradec Králové (CZ), University Hospital Kralovske Vinohrady (CZ), General University Hospital in Prague (CZ), University of Rochester (US), Medical University of Vienna (AT), Saarland University (DE)
Openalex Percentile: Top 51%
Lymphoma Diagnosis and Treatment
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