Characterization and Phylogenetic Analysis of the Complete Mitochondrial Genome of Celaenorrhinus victor (Lepidoptera: Hesperiidae)

<b>Background</b>: Skipper butterflies (Hesperiidae) are a morphologically distinctive lineage within Papilionoidea, yet relationships among many groups remain difficult to resolve, and mitochondrial genomic resources remain limited for some tribes, including Celaenorrhinini. <b>Methods</b>: We sequenced and characterized the complete mitochondrial genome of <i>Celaenorrhinus victor</i> using Illumina short-read sequencing. Gene content and organization were annotated, codon-usage patterns were assessed across Celaenorrhinus using relative synonymous codon usage and multiple compositional/selection tests (ENC-GC3s, neutrality, and PR2 analyses), selective constraints were evaluated using Ka/Ks for 13 protein-coding genes, and phylogenetic relationships were inferred with a partitioned maximum-likelihood analysis of 66 complete hesperiid mitogenomes. <b>Results</b>: The circular mitogenome of <i>C. victor</i> is 15,180 bp and contains the typical 37 genes (13 protein-coding genes, 22 tRNAs, and two rRNAs) plus an A + T-rich control region, with an overall A + T content of 79.64%. Gene order and orientation match those of other Celaenorrhinus and hesperiid mitogenomes. All protein-coding genes use standard invertebrate mitochondrial start codons (with cox1 initiating with TTG) and terminate with complete TAA stop codons. Codon usage is strongly biased toward A/U-ending codons and is broadly similar among five sampled Celaenorrhinus mitogenomes; ENC-GC3s, neutrality, and PR2 analyses indicate a predominant influence of A + T-directed mutational pressure with additional effects beyond base composition. Ka/Ks values for all 13 protein-coding genes were <1, consistent with pervasive purifying selection; cox genes were the most conserved, whereas several NADH dehydrogenase subunit genes evolved comparatively faster. The phylogeny recovered monophyletic Celaenorrhinini and a well-supported Celaenorrhinus clade, placing <i>C. victor</i> as sister to <i>Celaenorrhinus consanguineus</i>, while deeper nodes among major hesperiid lineages showed only moderate support in parts of the tree. <b>Conclusions</b>: This study provides a new mitogenomic resource for Celaenorrhinini and a comparative reference for codon usage and selective constraints within Celaenorrhinus, supporting the placement of <i>C. victor</i> within Hesperiidae while highlighting remaining uncertainty at deeper hesperiid divergences.

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Journal
Genes
Published
2026-02-19
DOI
https://doi.org/10.3390/genes17020244
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

Characterization and Phylogenetic Analysis of the Complete Mitochondrial Genome of Celaenorrhinus victor (Lepidoptera: Hesperiidae)

Xiao Zheng, X S Zhou, Xiaomin Ge, Site Luo et al.
Genes
Genomics and Phylogenetic Studies
article

Characterization and Phylogenetic Analysis of the Complete Mitochondrial Genome of Celaenorrhinus victor (Lepidoptera: Hesperiidae)

Xiao Zheng, X S Zhou, Xiaomin Ge, Site Luo, Yaping Hu, Bin Chen, Hui Ding, Zhentian Yan, Le Wang
article en

Abstract

<b>Background</b>: Skipper butterflies (Hesperiidae) are a morphologically distinctive lineage within Papilionoidea, yet relationships among many groups remain difficult to resolve, and mitochondrial genomic resources remain limited for some tribes, including Celaenorrhinini. <b>Methods</b>: We sequenced and characterized the complete mitochondrial genome of <i>Celaenorrhinus victor</i> using Illumina short-read sequencing. Gene content and organization were annotated, codon-usage patterns were assessed across Celaenorrhinus using relative synonymous codon usage and multiple compositional/selection tests (ENC-GC3s, neutrality, and PR2 analyses), selective constraints were evaluated using Ka/Ks for 13 protein-coding genes, and phylogenetic relationships were inferred with a partitioned maximum-likelihood analysis of 66 complete hesperiid mitogenomes. <b>Results</b>: The circular mitogenome of <i>C. victor</i> is 15,180 bp and contains the typical 37 genes (13 protein-coding genes, 22 tRNAs, and two rRNAs) plus an A + T-rich control region, with an overall A + T content of 79.64%. Gene order and orientation match those of other Celaenorrhinus and hesperiid mitogenomes. All protein-coding genes use standard invertebrate mitochondrial start codons (with cox1 initiating with TTG) and terminate with complete TAA stop codons. Codon usage is strongly biased toward A/U-ending codons and is broadly similar among five sampled Celaenorrhinus mitogenomes; ENC-GC3s, neutrality, and PR2 analyses indicate a predominant influence of A + T-directed mutational pressure with additional effects beyond base composition. Ka/Ks values for all 13 protein-coding genes were <1, consistent with pervasive purifying selection; cox genes were the most conserved, whereas several NADH dehydrogenase subunit genes evolved comparatively faster. The phylogeny recovered monophyletic Celaenorrhinini and a well-supported Celaenorrhinus clade, placing <i>C. victor</i> as sister to <i>Celaenorrhinus consanguineus</i>, while deeper nodes among major hesperiid lineages showed only moderate support in parts of the tree. <b>Conclusions</b>: This study provides a new mitogenomic resource for Celaenorrhinini and a comparative reference for codon usage and selective constraints within Celaenorrhinus, supporting the placement of <i>C. victor</i> within Hesperiidae while highlighting remaining uncertainty at deeper hesperiid divergences.

GenesVol. 17(2)
Chongqing Normal University (CN), Xiamen University (CN), Ministry of Ecology and Environment (CN)
Life in Land
Openalex Percentile: Top 50%
Genomics and Phylogenetic Studies
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