The chromosomal genome sequence of the sponge, Geodia parva Hansen, 1885 (Tetractinellida: Geodiidae) and its associated microbial metagenome sequences

<ns3:p> We present a genome assembly from an individual <ns3:italic>Geodia parva</ns3:italic> (sponge; Porifera; Demospongiae; Tetractinellida; Geodiidae). The genome sequence has a total length of 113.34 megabases. Most of the assembly (99.89%) is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 18.04 kilobases. Gene annotation of this assembly by Ensembl identified 20 464 protein-coding genes. From the metagenome data, we recovered 241 bins, of which 69 were high-quality MAGs. The microbial profile was characteristic of high microbial abundance (HMA) sponges with bins representing 17 different phyla and candidate phyla. Most MAGs were affiliated with the phyla Pseudomonadota, Acidobacteriota and Chloroflexota as well as several candidate phyla ( <ns3:italic>Ca.</ns3:italic> Latescibacteria, <ns3:italic>Ca.</ns3:italic> Poribacteria and <ns3:italic>Ca.</ns3:italic> Binatota). </ns3:p>

Authors

Publication Details

Journal
Wellcome Open Research
Published
2026-02-18
DOI
https://doi.org/10.12688/wellcomeopenres.25960.1
Primary Topic
Marine Sponges and Natural Products
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

The chromosomal genome sequence of the sponge, Geodia parva Hansen, 1885 (Tetractinellida: Geodiidae) and its associated microbial metagenome sequences

U Hentschel, Noah Gettle, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership et al.
Wellcome Open Research
Marine Sponges and Natural Products
article

The chromosomal genome sequence of the sponge, Geodia parva Hansen, 1885 (Tetractinellida: Geodiidae) and its associated microbial metagenome sequences

U Hentschel, Noah Gettle, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Kathrin Busch, Haoyu Niu, Paco Cárdenas, Rebecca O’Brien, Michael Paulini, Elizabeth Sinclair, Graeme Oatley, Eerik Aunin, Victoria McKenna, Dirk Erpenbeck, Camilla Santos
article en

Abstract

<ns3:p> We present a genome assembly from an individual <ns3:italic>Geodia parva</ns3:italic> (sponge; Porifera; Demospongiae; Tetractinellida; Geodiidae). The genome sequence has a total length of 113.34 megabases. Most of the assembly (99.89%) is scaffolded into 21 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 18.04 kilobases. Gene annotation of this assembly by Ensembl identified 20 464 protein-coding genes. From the metagenome data, we recovered 241 bins, of which 69 were high-quality MAGs. The microbial profile was characteristic of high microbial abundance (HMA) sponges with bins representing 17 different phyla and candidate phyla. Most MAGs were affiliated with the phyla Pseudomonadota, Acidobacteriota and Chloroflexota as well as several candidate phyla ( <ns3:italic>Ca.</ns3:italic> Latescibacteria, <ns3:italic>Ca.</ns3:italic> Poribacteria and <ns3:italic>Ca.</ns3:italic> Binatota). </ns3:p>

Wellcome Open ResearchVol. 11
Life below water
Openalex Percentile: Top 52%
Marine Sponges and Natural Products
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

The chromosomal genome sequence of the sponge, Geodia parva Hansen, 1885 (Tetractinellida: Geodiidae) and its associated microbial metagenome sequences — U Hentschel, Noah Gettle, et al. · Wellcome Open Research (2026) | TGRS Research Map | TGRS