Halotolerantifilum yawarlongkerapense gen. nov., sp. nov., a novel halotolerant and thermotolerant bacterium isolated from Lake Warden, and proposal of Guggenheimellaceae fam. nov. in the order Peptostreptococcales

A novel, strictly anaerobic, thermotolerant/halotolerant, heterotrophic bacterial strain, SD5<sup>T</sup>, was isolated from a brine lake near Esperance, Western Australia. The strain was a non-motile, non-spore-forming, Gram-stain-positive rod. The DNA G+C content was 53.1 mol%, and the length of the closed genome was 3.14 Mbp, with 2,978 protein-encoding genes. 16S rRNA gene sequence identity indicates that the strain is most closely related to <i>Fusibacter fontis</i> KhalAKB1<sup>T</sup> (89.50% identity). SD5<sup>T</sup> was phylogenomically distinct from its closest neighbors in the family <i>Acidaminobacteraceae</i>, with percentage of conserved proteins values ranging from 38.74% to 42.66%. The strain grew between 4 and 42 °C (optimum 37 °C), at pH values between 6.5 and 9.0 (optimum 7.0) and with 1-10% (w/v) sodium chloride (optimum 5%). The strain exhibited an aggregated growth phenotype associated with biofilm formation under stress, with cell chains reaching nearly 100 µm in length. The predominant fatty acids were iso-C<sub>15:1</sub> <i>ω</i>7<i>c</i> (11.8%), iso-C<sub>15:0</sub> (9.3%) and C<sub>16:0</sub> (9.3%). Based on phylogenomic and chemotaxonomic analyses, SD5<sup>T</sup> represents a novel species in a new genus, for which the name <i>Halotolerantifilum yawarlongkerapense</i> gen. nov., sp. nov., is proposed. The type strain is SD5<sup>T</sup> (=DSM 117693<sup>T</sup>=ATCC TSD-463<sup>T</sup>). From this work, we also propose the reassignment of several currently unranked genera within the class <i>Clostridia</i> to families within the order <i>Peptostreptococcales</i> and propose the novel family <i>Guggenheimellaceae</i> fam. nov. based on our sequencing results.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2026-02-18
DOI
https://doi.org/10.1099/ijsem.0.007084
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Halotolerantifilum yawarlongkerapense gen. nov., sp. nov., a novel halotolerant and thermotolerant bacterium isolated from Lake Warden, and proposal of Guggenheimellaceae fam. nov. in the order Peptostreptococcales

Bryce G. Inman, Douglas H. Bartlett, Enrica Quartini, Jordan McKaig et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Halotolerantifilum yawarlongkerapense gen. nov., sp. nov., a novel halotolerant and thermotolerant bacterium isolated from Lake Warden, and proposal of Guggenheimellaceae fam. nov. in the order Peptostreptococcales

Bryce G. Inman, Douglas H. Bartlett, Enrica Quartini, Jordan McKaig, Christopher E. Carr, Luke A. Fisher, Taylor Plattner, Jeff S. Bowman, Arthur Odenheimer, Saloni R. Dangre, Peter T. Doran, Britney Schmidt, Paul A. Lawson
article en

Abstract

A novel, strictly anaerobic, thermotolerant/halotolerant, heterotrophic bacterial strain, SD5<sup>T</sup>, was isolated from a brine lake near Esperance, Western Australia. The strain was a non-motile, non-spore-forming, Gram-stain-positive rod. The DNA G+C content was 53.1 mol%, and the length of the closed genome was 3.14 Mbp, with 2,978 protein-encoding genes. 16S rRNA gene sequence identity indicates that the strain is most closely related to <i>Fusibacter fontis</i> KhalAKB1<sup>T</sup> (89.50% identity). SD5<sup>T</sup> was phylogenomically distinct from its closest neighbors in the family <i>Acidaminobacteraceae</i>, with percentage of conserved proteins values ranging from 38.74% to 42.66%. The strain grew between 4 and 42 °C (optimum 37 °C), at pH values between 6.5 and 9.0 (optimum 7.0) and with 1-10% (w/v) sodium chloride (optimum 5%). The strain exhibited an aggregated growth phenotype associated with biofilm formation under stress, with cell chains reaching nearly 100 µm in length. The predominant fatty acids were iso-C<sub>15:1</sub> <i>ω</i>7<i>c</i> (11.8%), iso-C<sub>15:0</sub> (9.3%) and C<sub>16:0</sub> (9.3%). Based on phylogenomic and chemotaxonomic analyses, SD5<sup>T</sup> represents a novel species in a new genus, for which the name <i>Halotolerantifilum yawarlongkerapense</i> gen. nov., sp. nov., is proposed. The type strain is SD5<sup>T</sup> (=DSM 117693<sup>T</sup>=ATCC TSD-463<sup>T</sup>). From this work, we also propose the reassignment of several currently unranked genera within the class <i>Clostridia</i> to families within the order <i>Peptostreptococcales</i> and propose the novel family <i>Guggenheimellaceae</i> fam. nov. based on our sequencing results.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 76(2)
Louisiana State University (US), Georgia Institute of Technology (US), Scripps Institution of Oceanography (US), University of California, Los Angeles (US), Cornell University (US), University of California San Diego (US), University of Oklahoma (US)
Life below water
Openalex Percentile: Top 51%
Genomics and Phylogenetic Studies
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