Development and Assessment of a Pipeline for Extracting Structured Data From Free-Text Medical Reports Using a Large Language Model

Our study provides strong evidence of the potential of LLMs like Mistral Large for extracting structured BC biomarker data from pathology reports and the potential of such methods for broader digital transformation of health care documents.

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Publication Details

Journal
JCO Clinical Cancer Informatics
Published
2026-02-18
DOI
https://doi.org/10.1200/cci-25-00133
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
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article

Development and Assessment of a Pipeline for Extracting Structured Data From Free-Text Medical Reports Using a Large Language Model

Nicolas Wagneur, Tanguy Perennec, Mario Campone, F. BOCQUET et al.
JCO Clinical Cancer Informatics
Topic Modeling
article

Development and Assessment of a Pipeline for Extracting Structured Data From Free-Text Medical Reports Using a Large Language Model

Nicolas Wagneur, Tanguy Perennec, Mario Campone, F. BOCQUET, Florent Le Borgne, Enzo Joseph, Jean-Sébastien Frenel, Paul Vallee
article en

Abstract

Our study provides strong evidence of the potential of LLMs like Mistral Large for extracting structured BC biomarker data from pathology reports and the potential of such methods for broader digital transformation of health care documents.

JCO Clinical Cancer InformaticsVol. 10(10)
Centre National de la Recherche Scientifique (FR), Inserm (FR), Centre de Recherche en Cancérologie et Immunologie Intégrée Nantes Angers (FR), Droit et changement social (FR), Institut de Cancérologie de l'Ouest (FR), Nantes Université (FR)
Quality Education
Openalex Percentile: Top 54%
Topic Modeling
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Development and Assessment of a Pipeline for Extracting Structured Data From Free-Text Medical Reports Using a Large Language Model — Nicolas Wagneur, Tanguy Perennec, et al. · JCO Clinical Cancer Informatics (2026) | TGRS Research Map | TGRS