Structural and mechanistic insights into azetidine-associated αKG-NHFe enzyme OkaE with multifunctional catalysis

α-Ketoglutarate-dependent mononuclear non-haem iron (αKG-NHFe) enzymes are catalytically versatile, yet OkaE is unique for synthesizing azetidine rings via C-C bond formation. Here, we report the unexpected multifunctionality of OkaE, which catalyzes sequential oxidations. Isotopic labelling studies demonstrate that a second O₂ molecule participates in sequential epoxidation and ring cleavage, incorporating two oxygen atoms within a single catalytic cycle to form the previously unknown structure, neuokaramine IV. Crystal structures of the OkaE•Co<sup>II</sup>•αKG•okaramine A complex unveil a unique methionine-π interaction network that facilitates substrate binding. Mutational and crystallographic analyses suggest this network fine-tunes substrate orientation relative to the metallo-centre, activating distinct reaction pathways at the 3a-OH or C8a positions. QM/MM simulations indicate that dynamic rotation of the Fe<sup>IV</sup>=O species initiates the cycle, enabling reaction bifurcation. This study elucidates the structural and mechanistic basis of OkaE's reactivity, highlighting its potential as a programmable biocatalyst for natural product diversification.

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Publication Details

Journal
Nature Communications
Published
2026-02-17
DOI
https://doi.org/10.1038/s41467-026-69519-5
Primary Topic
Metalloenzymes and iron-sulfur proteins
Type
article
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article

Structural and mechanistic insights into azetidine-associated αKG-NHFe enzyme OkaE with multifunctional catalysis

Rongjie Wu, Xueting Liu, Nathchar Naowarojna, Mengxi Ju et al.
Nature Communications
Metalloenzymes and iron-sulfur proteins
article

Structural and mechanistic insights into azetidine-associated αKG-NHFe enzyme OkaE with multifunctional catalysis

Rongjie Wu, Xueting Liu, Nathchar Naowarojna, Mengxi Ju, Xinye Wang, Tom Hsiang, Xi Zhang, Lixin Zhang, Bin Zhu, Zhekai Xie, Pinghua Liu, Yao Nie, Junjie Yu, Yongtao Xie, Tonghai Liu, Yaohong Dong, Linlu Ping, Wupeng Yan, Biyu Gong
article en

Abstract

α-Ketoglutarate-dependent mononuclear non-haem iron (αKG-NHFe) enzymes are catalytically versatile, yet OkaE is unique for synthesizing azetidine rings via C-C bond formation. Here, we report the unexpected multifunctionality of OkaE, which catalyzes sequential oxidations. Isotopic labelling studies demonstrate that a second O₂ molecule participates in sequential epoxidation and ring cleavage, incorporating two oxygen atoms within a single catalytic cycle to form the previously unknown structure, neuokaramine IV. Crystal structures of the OkaE•Co<sup>II</sup>•αKG•okaramine A complex unveil a unique methionine-π interaction network that facilitates substrate binding. Mutational and crystallographic analyses suggest this network fine-tunes substrate orientation relative to the metallo-centre, activating distinct reaction pathways at the 3a-OH or C8a positions. QM/MM simulations indicate that dynamic rotation of the Fe<sup>IV</sup>=O species initiates the cycle, enabling reaction bifurcation. This study elucidates the structural and mechanistic basis of OkaE's reactivity, highlighting its potential as a programmable biocatalyst for natural product diversification.

Nature CommunicationsVol. 17(1)
Boston University (US), Jiangnan University (CN), East China University of Science and Technology (CN), Sun Yat-sen University (CN), Ludong University (CN), Shanghai Jiao Tong University (CN), Hainan University (CN), Sakon Nakhon Rajabhat University (TH), State Key Laboratory of Bioreactor Engineering, University of Guelph (CA)
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Openalex Percentile: Top 54%
Metalloenzymes and iron-sulfur proteins
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