Multiplex Species-Specific PCR Identification of Native Onchidiid Slugs in the South China Sea: A Useful Tool for Application in Onchidiid Slug Stock Management and Germplasm Conservation

To address the need for accurate onchidiid slug species identification, the present study engineered a multiplex PCR-based assay to facilitate the efficient, economical, and discrimination of five morphologically similar onchidiid slug species endemic to the South China Sea: <i>Onchidium stuxbergi</i>, <i>Peronia verruculata</i>, <i>Onchidium reevesii</i>, <i>Platevindex martensi</i> and <i>Paromoionchis tumidus</i>. A diagnostic multiplex PCR assay was designed based on a partial fragment of the mitochondrial cytochrome oxidase subunit I. It utilizes a shared forward primer and five taxon-specific reverse primers to simultaneously produce amplicons of varying sizes, each indicative of a particular species. Five species of Onchidiidae can be identified in a single reaction, which provides technical support for molecular identification of Onchidiidae. The development of a simple, effective and rapid multiple PCR identification method is of great significance for stock management and germplasm conservation of Onchidiidae.

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Publication Details

Journal
Animals
Published
2026-02-17
DOI
https://doi.org/10.3390/ani16040641
Primary Topic
Marine Biology and Ecology Research
Type
article
Field-Weighted Citation Impact
0.00

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article

Multiplex Species-Specific PCR Identification of Native Onchidiid Slugs in the South China Sea: A Useful Tool for Application in Onchidiid Slug Stock Management and Germplasm Conservation

Yan Qin, Ying Pan, Yu Ziniu, Xi Chen et al.
Animals
Marine Biology and Ecology Research
article

Multiplex Species-Specific PCR Identification of Native Onchidiid Slugs in the South China Sea: A Useful Tool for Application in Onchidiid Slug Stock Management and Germplasm Conservation

Yan Qin, Ying Pan, Yu Ziniu, Xi Chen, Jun Li, Xixi Duan, Zonglu Wei, Jingyue Huang, Yuehuan Zhang, Haitao Ma, Tao Zhang
article en

Abstract

To address the need for accurate onchidiid slug species identification, the present study engineered a multiplex PCR-based assay to facilitate the efficient, economical, and discrimination of five morphologically similar onchidiid slug species endemic to the South China Sea: <i>Onchidium stuxbergi</i>, <i>Peronia verruculata</i>, <i>Onchidium reevesii</i>, <i>Platevindex martensi</i> and <i>Paromoionchis tumidus</i>. A diagnostic multiplex PCR assay was designed based on a partial fragment of the mitochondrial cytochrome oxidase subunit I. It utilizes a shared forward primer and five taxon-specific reverse primers to simultaneously produce amplicons of varying sizes, each indicative of a particular species. Five species of Onchidiidae can be identified in a single reaction, which provides technical support for molecular identification of Onchidiidae. The development of a simple, effective and rapid multiple PCR identification method is of great significance for stock management and germplasm conservation of Onchidiidae.

AnimalsVol. 16(4)
Chinese Academy of Tropical Agricultural Sciences (CN), Guangxi University (CN), Chinese Academy of Sciences (CN), Key Laboratory of Guangdong Province (CN), Shenzhen Bay Laboratory (CN), South China Sea Institute Of Oceanology (CN), Guangdong Ocean University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Guangxi Province, Shenzhen Fundamental Research Program, National Key Research and Development Program of China, Science and Technology Planning Project of Guangdong Province, Basic and Applied Basic Research Foundation of Guangdong Province
Life below water
Openalex Percentile: Top 58%
Marine Biology and Ecology Research
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