The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences

We present a genome assembly from an individual <i>Lycopodina hypogea</i> (carnivorous sponge; Porifera; Demospongiae; Poecilosclerida; Cladorhizidae). The genome sequence has a total length of 235.10 megabases. Most of the assembly (98.85%) is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 31.1 kilobases. Gene annotation of this assembly by Ensembl identified 16 317 protein-coding genes. From the metagenome data we recovered 39 bins, of which 27 were high-quality MAGs, including four fully circularised genomes. The MAGs included archaea and bacteria involved in nitrification and sulfate-reduction as well as known sponge symbionts affiliated with Gammaproteobacteria ( <i>Candidatus</i> Spongiihabitans, Porisulfidus) and Acidimicrobiales ( <i>Candidatus</i> Poriferisodalaceae), among others.

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Publication Details

Journal
Wellcome Open Research
Published
2026-02-17
DOI
https://doi.org/10.12688/wellcomeopenres.25959.1
Primary Topic
Marine Sponges and Natural Products
Type
article
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article

The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences

U Hentschel, Toni Pérez, Noah Gettle, EBI Aquatic Symbiosis Genomics Data Portal Team et al.
Wellcome Open Research
Marine Sponges and Natural Products
article

The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet & Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences

U Hentschel, Toni Pérez, Noah Gettle, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Michael Paulini, Haoyu Niu, Rebecca O’Brien, Jean Vacelet, Eerik Aunin, Elizabeth Sinclair, Graeme Oatley, Victoria McKenna, Dirk Erpenbeck, Camilla Santos
article en

Abstract

We present a genome assembly from an individual <i>Lycopodina hypogea</i> (carnivorous sponge; Porifera; Demospongiae; Poecilosclerida; Cladorhizidae). The genome sequence has a total length of 235.10 megabases. Most of the assembly (98.85%) is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled, with a length of 31.1 kilobases. Gene annotation of this assembly by Ensembl identified 16 317 protein-coding genes. From the metagenome data we recovered 39 bins, of which 27 were high-quality MAGs, including four fully circularised genomes. The MAGs included archaea and bacteria involved in nitrification and sulfate-reduction as well as known sponge symbionts affiliated with Gammaproteobacteria ( <i>Candidatus</i> Spongiihabitans, Porisulfidus) and Acidimicrobiales ( <i>Candidatus</i> Poriferisodalaceae), among others.

Wellcome Open ResearchVol. 11
Wellcome Sanger Institute (GB), GEOMAR Helmholtz Centre for Ocean Research Kiel (DE), Bayerische Staatssammlung für Paläontologie und Geologie (DE), Institut Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (FR), Institut de Recherche pour le Développement (FR), Ludwig-Maximilians-Universität München (DE)
Life below water
Openalex Percentile: Top 54%
Marine Sponges and Natural Products
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The chromosomal genome sequence of the carnivorous sponge, Lycopodina hypogea (Vacelet &amp; Boury-Esnault, 1996) (Poecilosclerida: Cladorhizidae) and its associated microbial metagenome sequences — U Hentschel, Toni Pérez, et al. · Wellcome Open Research (2026) | TGRS Research Map | TGRS