pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources

pyBiodatafuse is open-source, with its source code and PyPi package available at https://github.com/BioDataFuse/pyBiodatafuse and https://pypi.org/project/pyBiodatafuse/. The user interface can be accessed at https://biodatafuse.org/. Additionally, a release has been made on Zenodo at https://doi.org/10.5281/zenodo.18468942.

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Publication Details

Journal
Bioinformatics
Published
2026-02-13
DOI
https://doi.org/10.1093/bioinformatics/btag064
Primary Topic
Bioinformatics and Genomic Networks
Type
article
Field-Weighted Citation Impact
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article

pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources

Javier Millán Acosta, Ammar Ammar, Dominik Martinát, Ana Claudia Sima et al.
Bioinformatics
Bioinformatics and Genomic Networks
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pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources

Javier Millán Acosta, Ammar Ammar, Dominik Martinát, Ana Claudia Sima, Tooba Abbassi-Daloii, Delano Wetstede, Egon Willighagen, Alejandro Adriaque Lozano, Hailiang Mei
article en

Abstract

pyBiodatafuse is open-source, with its source code and PyPi package available at https://github.com/BioDataFuse/pyBiodatafuse and https://pypi.org/project/pyBiodatafuse/. The user interface can be accessed at https://biodatafuse.org/. Additionally, a release has been made on Zenodo at https://doi.org/10.5281/zenodo.18468942.

BioinformaticsVol. 42(3)
SIB Swiss Institute of Bioinformatics (CH), University of Applied Sciences Leiden (NL), Leiden University Medical Center (NL), Maastricht University Medical Centre (NL), Maastricht University (NL), Amsterdam Neuroscience (NL), Enveda Therapeutics (United States) (US), Amsterdam University Medical Centers (NL), Palacký University Olomouc (CZ), University of Amsterdam (NL)
Openalex Percentile: Top 54%
Bioinformatics and Genomic Networks
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