Diversity over scale: Whole-slide image variety enables H&E foundation model training with fewer patches

Rapid progress in computational pathology is increasingly driven by vision foundation models pretrained on vast histopathology datasets. Whereas recent efforts have prioritized training on an ever-larger amount of patches, we take an alternative approach focused on data diversity. Our foundation model, Athena, was initialized from a pretrained model and trained on just 115 million tissue patches (282 k slides), several times fewer than recent histopathology foundation models. Rather than relying on patch volume or complex sampling heuristics, we maximize data diversity by randomly selecting only a moderate number of patches per whole-slide image from our diverse internal repository, which spans multiple countries, institutions, and scanner types. Evaluated on a single patch-level benchmark and four slide-level downstream tasks (two molecular and two morphological), Athena approaches the state-of-the-art and even surpasses several models trained on substantially larger datasets. This indicates that diversity across whole-slide images, rather than patch quantity alone, drives learning in histopathology foundation models.

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Publication Details

Journal
Journal of Pathology Informatics
Published
2026-02-16
DOI
https://doi.org/10.1016/j.jpi.2026.100648
Citations
1
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
52.10
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article

Diversity over scale: Whole-slide image variety enables H&E foundation model training with fewer patches

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article

Diversity over scale: Whole-slide image variety enables H&E foundation model training with fewer patches

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article en
1 citations

Abstract

Rapid progress in computational pathology is increasingly driven by vision foundation models pretrained on vast histopathology datasets. Whereas recent efforts have prioritized training on an ever-larger amount of patches, we take an alternative approach focused on data diversity. Our foundation model, Athena, was initialized from a pretrained model and trained on just 115 million tissue patches (282 k slides), several times fewer than recent histopathology foundation models. Rather than relying on patch volume or complex sampling heuristics, we maximize data diversity by randomly selecting only a moderate number of patches per whole-slide image from our diverse internal repository, which spans multiple countries, institutions, and scanner types. Evaluated on a single patch-level benchmark and four slide-level downstream tasks (two molecular and two morphological), Athena approaches the state-of-the-art and even surpasses several models trained on substantially larger datasets. This indicates that diversity across whole-slide images, rather than patch quantity alone, drives learning in histopathology foundation models.

Journal of Pathology InformaticsVol. 21
University of Health Science (KH), Heidelberg University (DE), University Hospital Heidelberg (DE), National Center for Tumor Diseases (DE), Institute of Health Management Pachod (IN), Heidelberg Engineering (Germany) (DE), Chirurgische Universitätsklinik Heidelberg (DE)
Industry, innovation and infrastructure
Openalex Percentile: Top 1%
AI in cancer detection
52.10
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