Turn-Dependent Folding and Contrasting Guest Encapsulation Behavior of <i>Tris</i> -Porphyrin Oligomers

We report the design and synthesis of two <i>tris</i>-porphyrin oligomers, <b>1</b> and <b>2</b>, incorporating phenanthroline and pyridine turn units, respectively, demonstrating their critical role in controlling the folding behavior of the oligomers and, consequently, guest binding ability. Oligomer <b>1</b> adopts a folded conformation stabilized by intramolecular hydrogen bonds between the endocyclic nitrogens of the phenanthroline units and the amide-<i>NH</i>s, leading to a cofacial arrangement of the porphyrins. It resulted in the formation of two cleft-like cavities that encapsulate electron-deficient planar guests having binding constants up to 10<sup>6</sup> M<sup>-1</sup> in a 1:2 stoichiometry. In contrast, oligomer <b>2</b> remains in the open state, despite intramolecular H-bonding, due to steric interactions between adjacent sheets, and exhibits negligible nonspecific interactions with the guests. It is evident from the nuclear magnetic resonance titration that oligomer <b>1</b> shows a strong binding toward guests <b>G1</b>-<b>G3</b>, with the first binding event more feasible than the second, while guests <b>G4</b>-<b>G6</b> show weak interactions. A combination of experimental investigations, density functional theory calculations, and 1 μs all-atom molecular dynamic simulations provides further insights into the structural aspects of the folded architecture and the guest recognition behavior.

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Journal
The Journal of Organic Chemistry
Published
2026-02-16
DOI
https://doi.org/10.1021/acs.joc.5c01802
Primary Topic
Supramolecular Chemistry and Complexes
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article
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article

Turn-Dependent Folding and Contrasting Guest Encapsulation Behavior of Tris -Porphyrin Oligomers

N. MALHOTRA, Dhrubajyoti Talukdar, Bappaditya Gole, Rabban Rabban et al.
The Journal of Organic Chemistry
Supramolecular Chemistry and Complexes
article

Turn-Dependent Folding and Contrasting Guest Encapsulation Behavior of Tris -Porphyrin Oligomers

N. MALHOTRA, Dhrubajyoti Talukdar, Bappaditya Gole, Rabban Rabban, Devid Sahu, Dhanyashree Das
article en

Abstract

We report the design and synthesis of two <i>tris</i>-porphyrin oligomers, <b>1</b> and <b>2</b>, incorporating phenanthroline and pyridine turn units, respectively, demonstrating their critical role in controlling the folding behavior of the oligomers and, consequently, guest binding ability. Oligomer <b>1</b> adopts a folded conformation stabilized by intramolecular hydrogen bonds between the endocyclic nitrogens of the phenanthroline units and the amide-<i>NH</i>s, leading to a cofacial arrangement of the porphyrins. It resulted in the formation of two cleft-like cavities that encapsulate electron-deficient planar guests having binding constants up to 10<sup>6</sup> M<sup>-1</sup> in a 1:2 stoichiometry. In contrast, oligomer <b>2</b> remains in the open state, despite intramolecular H-bonding, due to steric interactions between adjacent sheets, and exhibits negligible nonspecific interactions with the guests. It is evident from the nuclear magnetic resonance titration that oligomer <b>1</b> shows a strong binding toward guests <b>G1</b>-<b>G3</b>, with the first binding event more feasible than the second, while guests <b>G4</b>-<b>G6</b> show weak interactions. A combination of experimental investigations, density functional theory calculations, and 1 μs all-atom molecular dynamic simulations provides further insights into the structural aspects of the folded architecture and the guest recognition behavior.

The Journal of Organic ChemistryVol. 91(8)
Shiv Nadar University (IN)
Openalex Percentile: Top 52%
Supramolecular Chemistry and Complexes
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Turn-Dependent Folding and Contrasting Guest Encapsulation Behavior of <i>Tris</i> -Porphyrin Oligomers — N. MALHOTRA, Dhrubajyoti Talukdar, et al. · The Journal of Organic Chemistry (2026) | TGRS Research Map | TGRS