The progress and prospects of single-cell sequencing, multi-omics integration analysis, and immunotherapy targeting strategies in lung cancer research

Lung cancer is a highly prevalent and lethal malignant tumor globally, imposing a heavy burden on public health. Traditional treatments such as surgery, chemotherapy, and radiotherapy have significant limitations, failing to meet clinical needs. In recent years, single-cell sequencing, multi-omics integration analysis, and immunotherapy have emerged as pivotal technologies driving lung cancer research forward. Single-cell sequencing uncovers cellular heterogeneity, the complexity of the tumor microenvironment, and dynamic cellular alterations at single-cell resolution, providing accurate sample stratification for multi-omics studies. Multi-omics integration enables comprehensive analysis of molecular mechanisms across genomics, transcriptomics, proteomics, and metabolomics, facilitating biomarker identification, molecular subtyping, and investigation of drug resistance mechanisms. Immune-targeted therapies, including immune checkpoint inhibitors, adoptive cellular immunotherapy, and tumor vaccines, have achieved remarkable clinical efficacy by activating the body’s immune system. The three technologies exhibit strong synergy: single-cell sequencing enhances multi-omics data quality, multi-omics mining identifies new immunotherapeutic targets, and single-cell sequencing assists in immunotherapy efficacy monitoring. Despite existing challenges such as limited single-cell sequencing throughput, multi-omics data integration difficulties, and immunotherapy adverse reactions and cost issues, future advancements in technology optimization and multidisciplinary integration are expected to realize precise diagnosis and personalized treatment of lung cancer, improving patient survival rates and quality of life.

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Publication Details

Journal
Current Proteomics
Published
2025-12-01
DOI
https://doi.org/10.1016/j.curpro.2025.100060
Primary Topic
Single-cell and spatial transcriptomics
Type
article
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article

The progress and prospects of single-cell sequencing, multi-omics integration analysis, and immunotherapy targeting strategies in lung cancer research

Haishuang Sun, Dingyun Song, Junjun Zhou, Jin Zhang et al.
Current Proteomics
Single-cell and spatial transcriptomics
article

The progress and prospects of single-cell sequencing, multi-omics integration analysis, and immunotherapy targeting strategies in lung cancer research

Haishuang Sun, Dingyun Song, Junjun Zhou, Jin Zhang, Kaixuan Sun, Xina Yuan, Wei Zhao, Liping Tang, Qiyun Shi
article en

Abstract

Lung cancer is a highly prevalent and lethal malignant tumor globally, imposing a heavy burden on public health. Traditional treatments such as surgery, chemotherapy, and radiotherapy have significant limitations, failing to meet clinical needs. In recent years, single-cell sequencing, multi-omics integration analysis, and immunotherapy have emerged as pivotal technologies driving lung cancer research forward. Single-cell sequencing uncovers cellular heterogeneity, the complexity of the tumor microenvironment, and dynamic cellular alterations at single-cell resolution, providing accurate sample stratification for multi-omics studies. Multi-omics integration enables comprehensive analysis of molecular mechanisms across genomics, transcriptomics, proteomics, and metabolomics, facilitating biomarker identification, molecular subtyping, and investigation of drug resistance mechanisms. Immune-targeted therapies, including immune checkpoint inhibitors, adoptive cellular immunotherapy, and tumor vaccines, have achieved remarkable clinical efficacy by activating the body’s immune system. The three technologies exhibit strong synergy: single-cell sequencing enhances multi-omics data quality, multi-omics mining identifies new immunotherapeutic targets, and single-cell sequencing assists in immunotherapy efficacy monitoring. Despite existing challenges such as limited single-cell sequencing throughput, multi-omics data integration difficulties, and immunotherapy adverse reactions and cost issues, future advancements in technology optimization and multidisciplinary integration are expected to realize precise diagnosis and personalized treatment of lung cancer, improving patient survival rates and quality of life.

Current ProteomicsVol. 22(6)
Sun Yat-sen University (CN), China-Japan Friendship Hospital (CN), Chinese PLA General Hospital (CN), Sun Yat-sen University Cancer Center (CN)
Good health and well-being
Openalex Percentile: Top 33%
Single-cell and spatial transcriptomics
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