$Campylobacter$ Species Isolated From Wild Birds in Switzerland and Comparison to Isolates From Food and Human Origin

Campylobacter species, a major cause of gastroenteritis, have been frequently isolated from wild birds. Here we determined the prevalence of Campylobacter in wild birds from Switzerland. Campylobacter isolates were then further characterized by whole genome sequencing. A total of 154 samples from 27 different wild bird species were analyzed and Campylobacter was detected in 23 samples (14.9%). Twenty‐one isolates were identified as C. jejuni, one as C. coli and one isolate likely belongs to a novel species. Whole genome analyses revealed that the strains were diverse, belonging to 17 different sequence types. Antimicrobial resistances of the C. jejuni strains included class D ß‐lactamase bla $_{OXA}$ genes in all isolates, T86I mutations in GyrA conferring resistance to quinolones in 7 isolates, and tet (O) in 3 isolates. A comparison to 787 Campylobacter from various sources in Switzerland showed that strains spread between humans, poultry and wild birds. Moreover, plasmid analyses and genome comparison provided a strong indication of horizontal gene transfer between Campylobacter strains. Our results strongly support a One‐Health approach that includes wild animals to understand and control epidemiology of Campylobacter .