Chromosome-scale genome assembly and annotation of the two-spotted cricket <i>Gryllus bimaculatus</i> (Orthoptera: Gryllidae)
The two-spotted cricket, Gryllus bimaculatus, is a key hemimetabolous model organism for developmental biology, neuroscience, and regeneration. The existing reference genome is, however, highly fragmented into 47,877 scaffolds, hampering chromosome-scale analyses for these fields. Here, we report a high-quality, chromosome-scale genome assembly for the white-eyed mutant strain of this cricket, generated using a combination of Nanopore and PacBio HiFi long reads, integrated with Hi-C data. The final 1.62 Gbp assembly achieves a scaffold N50 of 107.4 Mbp, a significant improvement in contiguity over the previous 6.3 Mbp N50. We anchored 94.45% of the assembly into 15 pseudomolecules, consistent with the known karyotype (n = 15). The genome completeness (BUSCO v6.0.0 insecta_odb12) reached 98.1%. We also updated the annotation, identifying 14,964 protein-coding genes. This gene set shows markedly improved completeness (BUSCO v6.0.0 insecta_odb12: 95.7%) compared with the previous annotation (81.2%) and successfully recovers all nine essential neuropeptide genes previously reported as missing from the draft assembly. This chromosome-scale genomic resource provides an essential foundation for comparative and functional genomics in G. bimaculatus.
Authors
- Kei Yura (ORCID: https://orcid.org/0000-0003-0197-5478)
- Tomasz S. Gaczorek (ORCID: https://orcid.org/0000-0001-6370-5161)
- Guillem Ylla (ORCID: https://orcid.org/0000-0003-4540-0131)
- Upendra Raj Bhattarai (ORCID: https://orcid.org/0000-0003-1512-7218)
- Cassandra G. M. Extavour (ORCID: https://orcid.org/0000-0003-2922-5855)
- Taro Mito
- Kosuke Kataoka (ORCID: https://orcid.org/0000-0001-6023-7710)
- Shintaro Inoue (ORCID: https://orcid.org/0000-0003-1830-9447)
- Asahi Toru
- Ryuto Sanno4
- Yuki Ito
Institutions
- Otsuka (Japan) (JP)
- Jagiellonian University (PL)
- Howard Hughes Medical Institute (US)
- Harvard University (US)
- Waseda University (JP)
- Ochanomizu University (JP)
- Evolutionary Genomics (United States) (US)
- Tokushima University (JP)
- Tokyo University of Agriculture and Technology (JP)
Publication Details
- Journal
- G3 Genes Genomes Genetics
- Published
- 2026-02-12
- DOI
- https://doi.org/10.1093/g3journal/jkag036
- Primary Topic
- Orthoptera Research and Taxonomy
- Type
- article
- Field-Weighted Citation Impact
- 0.00