Chromosome-scale genome assembly and annotation of the two-spotted cricket <i>Gryllus bimaculatus</i> (Orthoptera: Gryllidae)

The two-spotted cricket, Gryllus bimaculatus, is a key hemimetabolous model organism for developmental biology, neuroscience, and regeneration. The existing reference genome is, however, highly fragmented into 47,877 scaffolds, hampering chromosome-scale analyses for these fields. Here, we report a high-quality, chromosome-scale genome assembly for the white-eyed mutant strain of this cricket, generated using a combination of Nanopore and PacBio HiFi long reads, integrated with Hi-C data. The final 1.62 Gbp assembly achieves a scaffold N50 of 107.4 Mbp, a significant improvement in contiguity over the previous 6.3 Mbp N50. We anchored 94.45% of the assembly into 15 pseudomolecules, consistent with the known karyotype (n = 15). The genome completeness (BUSCO v6.0.0 insecta_odb12) reached 98.1%. We also updated the annotation, identifying 14,964 protein-coding genes. This gene set shows markedly improved completeness (BUSCO v6.0.0 insecta_odb12: 95.7%) compared with the previous annotation (81.2%) and successfully recovers all nine essential neuropeptide genes previously reported as missing from the draft assembly. This chromosome-scale genomic resource provides an essential foundation for comparative and functional genomics in G. bimaculatus.

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Journal
G3 Genes Genomes Genetics
Published
2026-02-12
DOI
https://doi.org/10.1093/g3journal/jkag036
Primary Topic
Orthoptera Research and Taxonomy
Type
article
Field-Weighted Citation Impact
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article

Chromosome-scale genome assembly and annotation of the two-spotted cricket Gryllus bimaculatus (Orthoptera: Gryllidae)

Kei Yura, Tomasz S. Gaczorek, Guillem Ylla, Upendra Raj Bhattarai et al.
G3 Genes Genomes Genetics
Orthoptera Research and Taxonomy
article

Chromosome-scale genome assembly and annotation of the two-spotted cricket Gryllus bimaculatus (Orthoptera: Gryllidae)

Kei Yura, Tomasz S. Gaczorek, Guillem Ylla, Upendra Raj Bhattarai, Cassandra G. M. Extavour, Taro Mito, Kosuke Kataoka, Shintaro Inoue, Asahi Toru, Ryuto Sanno4, Yuki Ito
article en

Abstract

The two-spotted cricket, Gryllus bimaculatus, is a key hemimetabolous model organism for developmental biology, neuroscience, and regeneration. The existing reference genome is, however, highly fragmented into 47,877 scaffolds, hampering chromosome-scale analyses for these fields. Here, we report a high-quality, chromosome-scale genome assembly for the white-eyed mutant strain of this cricket, generated using a combination of Nanopore and PacBio HiFi long reads, integrated with Hi-C data. The final 1.62 Gbp assembly achieves a scaffold N50 of 107.4 Mbp, a significant improvement in contiguity over the previous 6.3 Mbp N50. We anchored 94.45% of the assembly into 15 pseudomolecules, consistent with the known karyotype (n = 15). The genome completeness (BUSCO v6.0.0 insecta_odb12) reached 98.1%. We also updated the annotation, identifying 14,964 protein-coding genes. This gene set shows markedly improved completeness (BUSCO v6.0.0 insecta_odb12: 95.7%) compared with the previous annotation (81.2%) and successfully recovers all nine essential neuropeptide genes previously reported as missing from the draft assembly. This chromosome-scale genomic resource provides an essential foundation for comparative and functional genomics in G. bimaculatus.

G3 Genes Genomes Genetics
Otsuka (Japan) (JP), Jagiellonian University (PL), Howard Hughes Medical Institute (US), Harvard University (US), Waseda University (JP), Ochanomizu University (JP), Evolutionary Genomics (United States) (US), Tokushima University (JP), Tokyo University of Agriculture and Technology (JP)
Openalex Percentile: Top 69%
Orthoptera Research and Taxonomy
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