Standard Operating Procedure for developing a sea urchin training dataset in VIAME

This document provides the standard operating procedure (SOP) for the development of training datasets for urchin detection in NOAA’s Video and Image Analytics for Marine Environments (VIAME), an image-recognition AI tool. It includes instructions on how to manually annotate, record species, and size urchins in benthic imagery and automate the calculation of abundance metrics. This SOP workflow includes 1) using ArcGIS Pro to subsample large orthomosaic images and import subsampled areas into VIAME, 2) manually annotating urchins in benthic imagery using the VIAME tool, and 3) confirming urchin species using underlying imagery via Viscore as outlined in the Viscore SOP.

Authors

Publication Details

Journal
National Oceanic and Atmospheric Administration (NOAA) - NOAA Central Library
Published
2026-02-11
DOI
https://doi.org/10.25923/arb0-jg96
Primary Topic
Marine and coastal plant biology
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Standard Operating Procedure for developing a sea urchin training dataset in VIAME

Tye L. Kindinger, Mia Lamirand, Courtney S. Couch, Hannah C. Barkley et al.
National Oceanic and Atmospheric Administration (NOAA) - NOAA Central Library
Marine and coastal plant biology
article

Standard Operating Procedure for developing a sea urchin training dataset in VIAME

Tye L. Kindinger, Mia Lamirand, Courtney S. Couch, Hannah C. Barkley, Candace E. Alagata
article en

Abstract

This document provides the standard operating procedure (SOP) for the development of training datasets for urchin detection in NOAA’s Video and Image Analytics for Marine Environments (VIAME), an image-recognition AI tool. It includes instructions on how to manually annotate, record species, and size urchins in benthic imagery and automate the calculation of abundance metrics. This SOP workflow includes 1) using ArcGIS Pro to subsample large orthomosaic images and import subsampled areas into VIAME, 2) manually annotating urchins in benthic imagery using the VIAME tool, and 3) confirming urchin species using underlying imagery via Viscore as outlined in the Viscore SOP.

National Oceanic and Atmospheric Administration (NOAA) - NOAA Central Library
Life below water
Openalex Percentile: Top 62%
Marine and coastal plant biology
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.