Multifactorial 1, 3, 4‐Oxadiazole Derivatives as Cholinesterase and Glycogen Synthase Kinase‐3 <i>β</i> Inhibitors for Targeting Alzheimer's Disease: QSAR‐Based Virtual Screening, MD Docking, Free Energy Analysis, ADMET, and DFT Studies

ABSTRACT Alzheimer's disease (AD) involves multiple pathogenic pathways, yet current therapeutic strategies remain largely symptomatic and focused on single molecular targets, underscoring a critical existing gap, emphasizing the need for rational multitarget drug design. Addressing this limitation, the present study employed an integrated in silico framework to identify multitarget 1,3,4‐oxadiazole derivatives against acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and glycogen synthase kinase‐3 β (GSK3β). A dataset of 273 reported compounds was used to develop robust QSAR models via Genetic Algorithm‐Multiple Linear Regression (GA‐MLR), exhibiting strong internal ( R 2 = 0.638–0.758, Q 2 LOO = 0.609–0.736) and satisfactory external predictivity ( Q 2 F1 − Q 2 F2 = 0.566–0.800). Subsequent virtual screening of 3404 1,3,4‐oxadiazoles from BindingDB identified 72 promising hits (IC₅₀ ≤ 300 nM), which underwent molecular dynamics (MD) docking. MD‐based CDOCKER analysis highlighted compound 2851 with superior binding energies and stable key interactions compared to donepezil, supported by binding free energy (Δ G ) calculations. ADMET evaluation indicated favorable pharmacokinetic and toxicity profiles, while density functional theory (DFT) analysis revealed enhanced reactivity and lower band gaps. This integrated computational workflow identified compound 2851 as a promising MT therapeutic agent for AD.

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Publication Details

Journal
Journal of Chemometrics
Published
2026-02-01
DOI
https://doi.org/10.1002/cem.70107
Primary Topic
Cholinesterase and Neurodegenerative Diseases
Type
article
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article

Multifactorial 1, 3, 4‐Oxadiazole Derivatives as Cholinesterase and Glycogen Synthase Kinase‐3 β Inhibitors for Targeting Alzheimer's Disease: QSAR‐Based Virtual Screening, MD Docking, Free Energy Analysis, ADMET, and DFT Studies

Jagadish Singh, Balaji Wamanrao Matore, Nikita Chhabra, Anjali Murmu et al.
Journal of Chemometrics
Cholinesterase and Neurodegenerative Diseases
article

Multifactorial 1, 3, 4‐Oxadiazole Derivatives as Cholinesterase and Glycogen Synthase Kinase‐3 β Inhibitors for Targeting Alzheimer's Disease: QSAR‐Based Virtual Screening, MD Docking, Free Energy Analysis, ADMET, and DFT Studies

Jagadish Singh, Balaji Wamanrao Matore, Nikita Chhabra, Anjali Murmu, Partha Pratim Roy
article en

Abstract

ABSTRACT Alzheimer's disease (AD) involves multiple pathogenic pathways, yet current therapeutic strategies remain largely symptomatic and focused on single molecular targets, underscoring a critical existing gap, emphasizing the need for rational multitarget drug design. Addressing this limitation, the present study employed an integrated in silico framework to identify multitarget 1,3,4‐oxadiazole derivatives against acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and glycogen synthase kinase‐3 β (GSK3β). A dataset of 273 reported compounds was used to develop robust QSAR models via Genetic Algorithm‐Multiple Linear Regression (GA‐MLR), exhibiting strong internal ( R 2 = 0.638–0.758, Q 2 LOO = 0.609–0.736) and satisfactory external predictivity ( Q 2 F1 − Q 2 F2 = 0.566–0.800). Subsequent virtual screening of 3404 1,3,4‐oxadiazoles from BindingDB identified 72 promising hits (IC₅₀ ≤ 300 nM), which underwent molecular dynamics (MD) docking. MD‐based CDOCKER analysis highlighted compound 2851 with superior binding energies and stable key interactions compared to donepezil, supported by binding free energy (Δ G ) calculations. ADMET evaluation indicated favorable pharmacokinetic and toxicity profiles, while density functional theory (DFT) analysis revealed enhanced reactivity and lower band gaps. This integrated computational workflow identified compound 2851 as a promising MT therapeutic agent for AD.

Journal of ChemometricsVol. 40(2)
Guru Ghasidas Vishwavidyalaya (IN)
Affordable and clean energy
Openalex Percentile: Top 61%
Cholinesterase and Neurodegenerative Diseases
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