Flavobacterium oryzagri sp. nov. and Flavobacterium oryzicola sp. nov., isolated from paddy soil

Two bacterial strains, designated M3-11<sup>T</sup> and M6-14<sup>T</sup>, were isolated from paddy field soils in the Republic of Korea. Cells were aerobic, Gram-stain-negative, rod-shaped and non-flagellated but motile. The strains exhibited optimal growth at 28 °C and pH 7.0 and in the absence of NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains M3-11<sup>T</sup> and M6-14<sup>T</sup> were placed within the genus <i>Flavobacterium</i>, showing the highest similarity to <i>Flavobacterium zhairuonense</i> A5.7<sup>T</sup> (97.98%) and <i>Flavobacterium nitrogenifigens</i> NXU-44<sup>T</sup> (98.23 %), respectively. The genomic similarity between two strains and their closely related strains was 39.3 and 51.1 % for digital DNA-DNA hybridization and 90.0 and 93.2 % for orthologous average nucleotide identity, both of which were lower than the thresholds recommended for species delineation. The respiratory quinone was menaquinone-6, and the major polar lipids were phosphatidylethanolamine and aminolipid. The major fatty acids (>10 %) were iso-C<sub>15 : 0</sub> and summed feature 3. The phenotypic, chemotaxonomic and genotypic data obtained in this study showed that strains M3-11<sup>T</sup> and M6-14<sup>T</sup> represent novel species of the genus <i>Flavobacterium</i>, for which the names <i>Flavobacterium oryzagri</i> sp. nov. (type strain M3-11<sup>T</sup>=KACC 22761<sup>T</sup>=JCM 35942<sup>T</sup>) and <i>Flavobacterium oryzicola</i> sp. nov. (type strain M6-14<sup>T</sup>=KACC 22763<sup>T</sup>=JCM 35943<sup>T</sup>) are proposed.

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Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2026-02-09
DOI
https://doi.org/10.1099/ijsem.0.007063
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Flavobacterium oryzagri sp. nov. and Flavobacterium oryzicola sp. nov., isolated from paddy soil

Yiseul Kim, Yunhee Choi, Jun Heo, Seunghwan Kim et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Flavobacterium oryzagri sp. nov. and Flavobacterium oryzicola sp. nov., isolated from paddy soil

Yiseul Kim, Yunhee Choi, Jun Heo, Seunghwan Kim, Daseul Lee, Hyorim Choi
article en

Abstract

Two bacterial strains, designated M3-11<sup>T</sup> and M6-14<sup>T</sup>, were isolated from paddy field soils in the Republic of Korea. Cells were aerobic, Gram-stain-negative, rod-shaped and non-flagellated but motile. The strains exhibited optimal growth at 28 °C and pH 7.0 and in the absence of NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains M3-11<sup>T</sup> and M6-14<sup>T</sup> were placed within the genus <i>Flavobacterium</i>, showing the highest similarity to <i>Flavobacterium zhairuonense</i> A5.7<sup>T</sup> (97.98%) and <i>Flavobacterium nitrogenifigens</i> NXU-44<sup>T</sup> (98.23 %), respectively. The genomic similarity between two strains and their closely related strains was 39.3 and 51.1 % for digital DNA-DNA hybridization and 90.0 and 93.2 % for orthologous average nucleotide identity, both of which were lower than the thresholds recommended for species delineation. The respiratory quinone was menaquinone-6, and the major polar lipids were phosphatidylethanolamine and aminolipid. The major fatty acids (>10 %) were iso-C<sub>15 : 0</sub> and summed feature 3. The phenotypic, chemotaxonomic and genotypic data obtained in this study showed that strains M3-11<sup>T</sup> and M6-14<sup>T</sup> represent novel species of the genus <i>Flavobacterium</i>, for which the names <i>Flavobacterium oryzagri</i> sp. nov. (type strain M3-11<sup>T</sup>=KACC 22761<sup>T</sup>=JCM 35942<sup>T</sup>) and <i>Flavobacterium oryzicola</i> sp. nov. (type strain M6-14<sup>T</sup>=KACC 22763<sup>T</sup>=JCM 35943<sup>T</sup>) are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 76(2)
Rural Development Administration (KR), Jeonbuk National University (KR)
Life in Land
Openalex Percentile: Top 63%
Genomics and Phylogenetic Studies
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