CeLLTra: aligning cell names with gene expression via a pathway-informed transformer
CeLLTra is freely available on GitHub (https://github.com/WJZheng-group/CeLLTra) and Zenodo (https://doi.org/10.5281/zenodo.17666735). The datasets underlying this article are the following: GSE201333 and GSE127465. All these datasets are publicly available and can be freely accessed on the Gene Expression Omnibus repository.
Authors
- Meer Asif Ali
- Zaiyi Zheng (ORCID: https://orcid.org/0009-0003-0685-0057)
- Li Zhao (ORCID: https://orcid.org/0000-0002-2544-0876)
- Jundong Li
- Yuntao Yang
- Wenbo Chen
- W Jim Zheng
- Rongbin Li
Institutions
- The University of Texas MD Anderson Cancer Center (US)
- The University of Texas Health Science Center (US)
- University of Virginia (US)
- The University of Texas Health Science Center at Houston (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-12-04
- DOI
- https://doi.org/10.1093/bioinformatics/btaf655
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00