Gordonia heveisoli sp. nov. and Gordonia gummivorans sp. nov., two natural rubber-degrading actinobacteria isolated from soil in Hevea brasiliensis plantations

During a survey for natural-rubber-degrading actinobacteria associated with soils from <i>Hevea brasiliensis</i> plantations in Thailand, two strains, ABSL1-1<sup>T</sup> and ABSL49-1<sup>T</sup>, were isolated using mineral salts medium with natural rubber as the sole carbon source. Polyphasic taxonomy placed both strains within the genus <i>Gordonia</i>. Strain ABSL1-1<sup>T</sup> showed the highest 16S rRNA gene sequence similarity to <i>Gordonia otitidis</i> NBRC 100426<sup>T</sup> (98.5%) and <i>Gordonia soli</i> NBRC 108243<sup>T</sup> (98.3%), while ABSL49-1<sup>T</sup> showed the highest similarity to <i>Gordonia polyisoprenivorans</i> DSM 44302<sup>T</sup> (98.4%). The digital DNA-DNA hybridization (dDDH) and average nucleotide identity based on blast values between ABSL1-1<sup>T</sup> and closely related type strains were 20.1-20.9%, and 74.1-76.5%, respectively, while those for ABSL49-1<sup>T</sup> and closely related type strains were 20.6-22.9%, and 74.3-79.1%, respectively. The cell-wall peptidoglycan of both strains contained <i>meso</i>-diaminopimelic acid and the whole-cell sugars comprised ribose, arabinose, galactose and glucose. Both strains contained MK-9(H<sub>2</sub>) as the major menaquinone and phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside were detected as the polar lipids. The predominant fatty acids of ABSL1-1<sup>T</sup> were C<sub>16:0</sub>, and C<sub>18:1</sub> <i> </i>ω<i>9c</i>, while those for ABSL49-1<sup>T</sup> were C<sub>16:0</sub>, C<sub>18:1</sub> <i> </i>ω<i>9c</i>, summed feature 3 (C<sub>16:1</sub> <i> </i>ω<i>7</i>c/<sub>C16:1</sub> <i> </i>ω<i>6c</i>) and C<sub>18:0</sub> 10-methyl. The G+C contents of the genomic DNA of strains ABSL1-1<sup>T</sup> and ABSL49-1<sup>T</sup> were 67.0 mol% and 66.0 mol%, respectively. Based on the results of a polyphasic taxonomic analysis, strains ABSL1-1ᵀ and ABSL49-1ᵀ represent the type strains of two novel species of the genus <i>Gordonia</i>, for which the names <i>Gordonia heveisoli</i> sp. nov. (type strain ABSL1-1ᵀ=TBRC 15892ᵀ=NBRC 116252ᵀ) and <i>Gordonia gummivorans</i> sp. nov. (type strain ABSL49-1ᵀ=TBRC 15624ᵀ=NBRC 115559ᵀ) are proposed.

Authors

Institutions

Publication Details

Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2026-02-05
DOI
https://doi.org/10.1099/ijsem.0.007055
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Gordonia heveisoli sp. nov. and Gordonia gummivorans sp. nov., two natural rubber-degrading actinobacteria isolated from soil in Hevea brasiliensis plantations

Tawanmol Pujchakarn, Chanwit Suriyachadkun, Wipaporn Ngaemthao, Papichaya Kwantong et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Gordonia heveisoli sp. nov. and Gordonia gummivorans sp. nov., two natural rubber-degrading actinobacteria isolated from soil in Hevea brasiliensis plantations

Tawanmol Pujchakarn, Chanwit Suriyachadkun, Wipaporn Ngaemthao, Papichaya Kwantong, Thanawadee Leejarkpai, Nattawut Boonyuen, Nitcha Chamroensaksri, Chomnutcha Boonmee
article en

Abstract

During a survey for natural-rubber-degrading actinobacteria associated with soils from <i>Hevea brasiliensis</i> plantations in Thailand, two strains, ABSL1-1<sup>T</sup> and ABSL49-1<sup>T</sup>, were isolated using mineral salts medium with natural rubber as the sole carbon source. Polyphasic taxonomy placed both strains within the genus <i>Gordonia</i>. Strain ABSL1-1<sup>T</sup> showed the highest 16S rRNA gene sequence similarity to <i>Gordonia otitidis</i> NBRC 100426<sup>T</sup> (98.5%) and <i>Gordonia soli</i> NBRC 108243<sup>T</sup> (98.3%), while ABSL49-1<sup>T</sup> showed the highest similarity to <i>Gordonia polyisoprenivorans</i> DSM 44302<sup>T</sup> (98.4%). The digital DNA-DNA hybridization (dDDH) and average nucleotide identity based on blast values between ABSL1-1<sup>T</sup> and closely related type strains were 20.1-20.9%, and 74.1-76.5%, respectively, while those for ABSL49-1<sup>T</sup> and closely related type strains were 20.6-22.9%, and 74.3-79.1%, respectively. The cell-wall peptidoglycan of both strains contained <i>meso</i>-diaminopimelic acid and the whole-cell sugars comprised ribose, arabinose, galactose and glucose. Both strains contained MK-9(H<sub>2</sub>) as the major menaquinone and phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside were detected as the polar lipids. The predominant fatty acids of ABSL1-1<sup>T</sup> were C<sub>16:0</sub>, and C<sub>18:1</sub> <i> </i>ω<i>9c</i>, while those for ABSL49-1<sup>T</sup> were C<sub>16:0</sub>, C<sub>18:1</sub> <i> </i>ω<i>9c</i>, summed feature 3 (C<sub>16:1</sub> <i> </i>ω<i>7</i>c/<sub>C16:1</sub> <i> </i>ω<i>6c</i>) and C<sub>18:0</sub> 10-methyl. The G+C contents of the genomic DNA of strains ABSL1-1<sup>T</sup> and ABSL49-1<sup>T</sup> were 67.0 mol% and 66.0 mol%, respectively. Based on the results of a polyphasic taxonomic analysis, strains ABSL1-1ᵀ and ABSL49-1ᵀ represent the type strains of two novel species of the genus <i>Gordonia</i>, for which the names <i>Gordonia heveisoli</i> sp. nov. (type strain ABSL1-1ᵀ=TBRC 15892ᵀ=NBRC 116252ᵀ) and <i>Gordonia gummivorans</i> sp. nov. (type strain ABSL49-1ᵀ=TBRC 15624ᵀ=NBRC 115559ᵀ) are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 76(2)
National Science and Technology Development Agency (TH), National Center for Genetic Engineering and Biotechnology (TH)
Life in Land
Openalex Percentile: Top 65%
Genomics and Phylogenetic Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.