Gaussian Process Inference Reveals Non-separability of Position and Velocity Tuning in Grid Cells

Grid cells in medial entorhinal cortex (MEC) support spatial navigation by responding to multiple variables, including position, speed, and head direction. While tuning curves for each of these variables have been examined individually at the level of single-cells, less is known about the conjunctive coding of grid cells for these properties. To investigate this, we analyzed neural recordings of freely foraging rats and constructed four-dimensional (4D) tuning curves across 2D position and 2D velocity. In order to combat the sparse sampling of such a large behavioral space, we applied Gaussian Process (GP) methods to estimate firing rates at un-sampled points. Comparing GP model-derived tuning curves to those predicted by a fully separable model revealed that some cells exhibited significant non-separability of position and velocity tuning, and suggested a data coverage threshold necessary to observe this non-separability. In summary, our use of GPs allowed us to distinguish interactions in position-velocity tuning across a 4D behavioral space that have not been apparent in 2D analyses.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-02-04
DOI
https://doi.org/10.64898/2026.02.02.703269
Primary Topic
Memory and Neural Mechanisms
Type
article
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article

Gaussian Process Inference Reveals Non-separability of Position and Velocity Tuning in Grid Cells

Surya Ganguli, Lisa Giocomo, Linnie Warton
bioRxiv (Cold Spring Harbor Laboratory)
Memory and Neural Mechanisms
article

Gaussian Process Inference Reveals Non-separability of Position and Velocity Tuning in Grid Cells

Surya Ganguli, Lisa Giocomo, Linnie Warton
article en

Abstract

Grid cells in medial entorhinal cortex (MEC) support spatial navigation by responding to multiple variables, including position, speed, and head direction. While tuning curves for each of these variables have been examined individually at the level of single-cells, less is known about the conjunctive coding of grid cells for these properties. To investigate this, we analyzed neural recordings of freely foraging rats and constructed four-dimensional (4D) tuning curves across 2D position and 2D velocity. In order to combat the sparse sampling of such a large behavioral space, we applied Gaussian Process (GP) methods to estimate firing rates at un-sampled points. Comparing GP model-derived tuning curves to those predicted by a fully separable model revealed that some cells exhibited significant non-separability of position and velocity tuning, and suggested a data coverage threshold necessary to observe this non-separability. In summary, our use of GPs allowed us to distinguish interactions in position-velocity tuning across a 4D behavioral space that have not been apparent in 2D analyses.

bioRxiv (Cold Spring Harbor Laboratory)
Howard Hughes Medical Institute (US), Stanford University (US)
Openalex Percentile: Top 65%
Memory and Neural Mechanisms
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