Multi-echo BOLD fMRI improves cerebrovascular reactivity estimates in stroke

Cerebrovascular reactivity (CVR), the ability of cerebral blood vessels to dilate or constrict in response to a vasoactive stimulus, is a clinically meaningful measure of cerebrovascular health. Head motion and other noise sources substantially impact CVR quality, particularly in clinical populations. In this study, we evaluated multi-echo fMRI techniques, including optimal combination of echoes (ME-OC) and multi-echo independent component analysis (ME-ICA), for improving CVR quality relative to single-echo fMRI in participants with stroke. In a breath-hold fMRI dataset, ME-OC significantly improved CVR quality metrics and reduced the percentage of negative CVR values in normal-appearing gray and white matter (<i>p</i><0.05). ME-ICA reduced the dependence of BOLD signals on head motion but did not improve CVR quality metrics. In a separate resting-state dataset, ME-OC effects were largely consistent with the breath-hold dataset, but ME-ICA also significantly improved CVR quality metrics and reduced negative CVR values in normal-appearing gray and white matter relative to ME-OC (<i>p</i><0.05). These findings demonstrate that multi-echo fMRI can improve CVR estimation in clinical populations, particularly in low signal-to-noise datasets, enhancing the feasibility of CVR analyses in stroke studies and allowing for better visualization of stroke-related CVR deficits.