Trihelix Transcription Factor Family in Common Bean ( <i>Phaseolus vulgaris</i> L.): Genome‐Wide Investigation, Evolution, Structural Characterization, and Expression Patterns Under Abiotic Stresses

The trihelix transcription factor family, also known as GT factors, plays a key role in regulating plant growth, development, and responses to various abiotic stresses. These plant‐specific transcription factors are characterized by a conserved trihelix DNA‐binding domain. This study presents the first comprehensive genome‐wide identification and bioinformatic analysis of Trihelix genes in common bean. A total of 38 Trihelix genes ( PvTH ) were identified and classified into five subgroups: GT‐1, GT‐2, GT γ , SH4, and SIP1. Analyses included phylogenetic relationships, chromosomal distribution, tandem and segmental duplication events, gene structures, promoter regions, exon–intron organization, miRNA interactions, conserved motif identification, 3D protein structure predictions, and synteny relationships with Arabidopsis and soybean. Additionally, RNA‐seq data were used to evaluate the expression profiles of PvTH genes under salt and H 2 O 2 stress, and qPCR analyses confirmed the altered mRNA expression levels after stress treatments. Several PvTH genes showed statistically significant responses under these stress conditions, suggesting their involvement in abiotic stress responses in beans. The findings of this study are novel and contribute to the understanding of the Trihelix gene family in common bean, providing a valuable resource for further functional and stress‐related research in legume crops.

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Publication Details

Journal
New Zealand Journal of Crop and Horticultural Science
Published
2026-02-06
DOI
https://doi.org/10.1002/nzc2.70106
Primary Topic
Plant Molecular Biology Research
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article
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article

Trihelix Transcription Factor Family in Common Bean ( Phaseolus vulgaris L.): Genome‐Wide Investigation, Evolution, Structural Characterization, and Expression Patterns Under Abiotic Stresses

İLKER BÜYÜK, Aybüke Okay, Ahmet Aşkın Yılmaz, Samet Can Eker et al.
New Zealand Journal of Crop and Horticultural Science
Plant Molecular Biology Research
article

Trihelix Transcription Factor Family in Common Bean ( Phaseolus vulgaris L.): Genome‐Wide Investigation, Evolution, Structural Characterization, and Expression Patterns Under Abiotic Stresses

İLKER BÜYÜK, Aybüke Okay, Ahmet Aşkın Yılmaz, Samet Can Eker, E. Sümer Aras
article en

Abstract

The trihelix transcription factor family, also known as GT factors, plays a key role in regulating plant growth, development, and responses to various abiotic stresses. These plant‐specific transcription factors are characterized by a conserved trihelix DNA‐binding domain. This study presents the first comprehensive genome‐wide identification and bioinformatic analysis of Trihelix genes in common bean. A total of 38 Trihelix genes ( PvTH ) were identified and classified into five subgroups: GT‐1, GT‐2, GT γ , SH4, and SIP1. Analyses included phylogenetic relationships, chromosomal distribution, tandem and segmental duplication events, gene structures, promoter regions, exon–intron organization, miRNA interactions, conserved motif identification, 3D protein structure predictions, and synteny relationships with Arabidopsis and soybean. Additionally, RNA‐seq data were used to evaluate the expression profiles of PvTH genes under salt and H 2 O 2 stress, and qPCR analyses confirmed the altered mRNA expression levels after stress treatments. Several PvTH genes showed statistically significant responses under these stress conditions, suggesting their involvement in abiotic stress responses in beans. The findings of this study are novel and contribute to the understanding of the Trihelix gene family in common bean, providing a valuable resource for further functional and stress‐related research in legume crops.

New Zealand Journal of Crop and Horticultural ScienceVol. 54(1)
Ankara University (TR)
Openalex Percentile: Top 65%
Plant Molecular Biology Research
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