Establishing dermatopathology encyclopedia DermpathNet with Artificial Intelligence-Based Workflow

Accessing high-quality, open-access dermatopathology image datasets for learning and cross-referencing is a common challenge for clinicians and trainees. To establish a comprehensive open-access dermatopathology dataset for educational, cross-referencing, and machine-learning purposes, we employed a hybrid workflow to curate and categorize images from the PubMed Central (PMC) repository. We used specific keywords to extract relevant images, and classified them using a novel hybrid method that combined deep learning-based image modality classification with figure caption analyses. Validation on 651 manually annotated images demonstrated the robustness of our workflow, with an F-score of 89.6% for the deep learning approach, 61.0% for the keyword-based retrieval method, and 90.4% for the hybrid approach. We retrieved over 7,772 images across 166 diagnoses and released this fully annotated dataset, reviewed by board-certified dermatopathologists. Using our dataset as a challenging task, we found the current image analysis algorithm from OpenAI inadequate for analyzing dermatopathology images. In conclusion, we have developed a large, peer-reviewed, open-access dermatopathology image dataset, DermpathNet, which features a semi-automated curation workflow.

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Publication Details

Journal
Scientific Data
Published
2026-02-06
DOI
https://doi.org/10.1038/s41597-026-06715-4
Primary Topic
Cutaneous Melanoma Detection and Management
Type
article
Field-Weighted Citation Impact
0.00

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article

Establishing dermatopathology encyclopedia DermpathNet with Artificial Intelligence-Based Workflow

Ziyang Xu, Ata S. Moshiri, Yiliang Zhou, Zihan Xu et al.
Scientific Data
Cutaneous Melanoma Detection and Management
article

Establishing dermatopathology encyclopedia DermpathNet with Artificial Intelligence-Based Workflow

Ziyang Xu, Ata S. Moshiri, Yiliang Zhou, Zihan Xu, Seth J. Orlow, Yifan Peng, Alexandra F. Flamm, Shane Meehan, Mingquan Lin
article en

Abstract

Accessing high-quality, open-access dermatopathology image datasets for learning and cross-referencing is a common challenge for clinicians and trainees. To establish a comprehensive open-access dermatopathology dataset for educational, cross-referencing, and machine-learning purposes, we employed a hybrid workflow to curate and categorize images from the PubMed Central (PMC) repository. We used specific keywords to extract relevant images, and classified them using a novel hybrid method that combined deep learning-based image modality classification with figure caption analyses. Validation on 651 manually annotated images demonstrated the robustness of our workflow, with an F-score of 89.6% for the deep learning approach, 61.0% for the keyword-based retrieval method, and 90.4% for the hybrid approach. We retrieved over 7,772 images across 166 diagnoses and released this fully annotated dataset, reviewed by board-certified dermatopathologists. Using our dataset as a challenging task, we found the current image analysis algorithm from OpenAI inadequate for analyzing dermatopathology images. In conclusion, we have developed a large, peer-reviewed, open-access dermatopathology image dataset, DermpathNet, which features a semi-automated curation workflow.

Scientific DataVol. 13(1)
Mount Sinai Health System (US), Cornell University (US), Mount Sinai Medical Center (US), Ackerman Academy of Dermatopathology (US), Weill Cornell Medicine (US), New York University (US), Icahn School of Medicine at Mount Sinai (US)
National Science Foundation
Quality Education
Openalex Percentile: Top 64%
Cutaneous Melanoma Detection and Management
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