Establishing dermatopathology encyclopedia DermpathNet with Artificial Intelligence-Based Workflow
Accessing high-quality, open-access dermatopathology image datasets for learning and cross-referencing is a common challenge for clinicians and trainees. To establish a comprehensive open-access dermatopathology dataset for educational, cross-referencing, and machine-learning purposes, we employed a hybrid workflow to curate and categorize images from the PubMed Central (PMC) repository. We used specific keywords to extract relevant images, and classified them using a novel hybrid method that combined deep learning-based image modality classification with figure caption analyses. Validation on 651 manually annotated images demonstrated the robustness of our workflow, with an F-score of 89.6% for the deep learning approach, 61.0% for the keyword-based retrieval method, and 90.4% for the hybrid approach. We retrieved over 7,772 images across 166 diagnoses and released this fully annotated dataset, reviewed by board-certified dermatopathologists. Using our dataset as a challenging task, we found the current image analysis algorithm from OpenAI inadequate for analyzing dermatopathology images. In conclusion, we have developed a large, peer-reviewed, open-access dermatopathology image dataset, DermpathNet, which features a semi-automated curation workflow.
Authors
- Ziyang Xu (ORCID: https://orcid.org/0009-0007-3228-9821)
- Ata S. Moshiri (ORCID: https://orcid.org/0000-0001-6684-4503)
- Yiliang Zhou (ORCID: https://orcid.org/0009-0002-7457-7075)
- Zihan Xu (ORCID: https://orcid.org/0009-0009-1387-3832)
- Seth J. Orlow (ORCID: https://orcid.org/0000-0003-2548-7380)
- Yifan Peng (ORCID: https://orcid.org/0000-0003-0667-2599)
- Alexandra F. Flamm (ORCID: https://orcid.org/0000-0001-6719-9411)
- Shane Meehan
- Mingquan Lin
Institutions
- Mount Sinai Health System (US)
- Cornell University (US)
- Mount Sinai Medical Center (US)
- Ackerman Academy of Dermatopathology (US)
- Weill Cornell Medicine (US)
- New York University (US)
- Icahn School of Medicine at Mount Sinai (US)
Publication Details
- Journal
- Scientific Data
- Published
- 2026-02-06
- DOI
- https://doi.org/10.1038/s41597-026-06715-4
- Primary Topic
- Cutaneous Melanoma Detection and Management
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Science Foundation