Do Amino-Oxetanes Resemble Amides? A Matched Molecular Pairs Property and Structural Comparison

Oxetanes display properties comparable to ketone carbonyl groups and are increasingly explored as bioisosteres. However, does the comparison hold for the most common carbonyl derivatives: do amino-oxetanes resemble amides? Here, we present a matched molecular pair study of 12 3-aryl-3-amino-oxetane and benzamide matched molecular pairs to assess their viability as isosteres. Across the surveyed physicochemical properties (pH stability, solubility, lipophilicity, clearance, permeability), amino-oxetanes exhibited broadly comparable profiles to their amide counterparts. Amino-oxetanes maintain both the H-bond acceptor and H-bond donor capabilities of analogous amides. These findings support the potential of amino-oxetanes as amide replacements. However, crystal structure analysis highlights the conformational differences and alternative exit vectors available through introduction of the oxetane ring. The preferred <i>gauche</i> conformation makes the torsion angle and exit vectors of amino-oxetanes more similar to sulfonamides, and therefore better like-for-like topological replacements. Overall, amino-oxetanes present an attractive design option to modulate physicochemical properties and chemical topology.

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Publication Details

Journal
Journal of Medicinal Chemistry
Published
2026-02-04
DOI
https://doi.org/10.1021/acs.jmedchem.5c02614
Primary Topic
Crystallography and molecular interactions
Type
article
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article

Do Amino-Oxetanes Resemble Amides? A Matched Molecular Pairs Property and Structural Comparison

Juan J. Rojas, Luka Blagojevic, James A. Bull, J KH Luk et al.
Journal of Medicinal Chemistry
Crystallography and molecular interactions
article

Do Amino-Oxetanes Resemble Amides? A Matched Molecular Pairs Property and Structural Comparison

Juan J. Rojas, Luka Blagojevic, James A. Bull, J KH Luk, Chulho Choi, C. Romain, Hikaru Ishikura, Rosemary A. Croft, Gavin J. Smith, Callum S. Begg
article en

Abstract

Oxetanes display properties comparable to ketone carbonyl groups and are increasingly explored as bioisosteres. However, does the comparison hold for the most common carbonyl derivatives: do amino-oxetanes resemble amides? Here, we present a matched molecular pair study of 12 3-aryl-3-amino-oxetane and benzamide matched molecular pairs to assess their viability as isosteres. Across the surveyed physicochemical properties (pH stability, solubility, lipophilicity, clearance, permeability), amino-oxetanes exhibited broadly comparable profiles to their amide counterparts. Amino-oxetanes maintain both the H-bond acceptor and H-bond donor capabilities of analogous amides. These findings support the potential of amino-oxetanes as amide replacements. However, crystal structure analysis highlights the conformational differences and alternative exit vectors available through introduction of the oxetane ring. The preferred <i>gauche</i> conformation makes the torsion angle and exit vectors of amino-oxetanes more similar to sulfonamides, and therefore better like-for-like topological replacements. Overall, amino-oxetanes present an attractive design option to modulate physicochemical properties and chemical topology.

Journal of Medicinal ChemistryVol. 69(4)
Pfizer (United States) (US), London Biofoundry (GB)
Openalex Percentile: Top 65%
Crystallography and molecular interactions
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Do Amino-Oxetanes Resemble Amides? A Matched Molecular Pairs Property and Structural Comparison — Juan J. Rojas, Luka Blagojevic, et al. · Journal of Medicinal Chemistry (2026) | TGRS Research Map | TGRS