Genome sequencing, de novo assembly and annotation of the commercially important bamboo, Bambusa tulda Roxb

Bambusa tulda Roxb., a member of the Bambusoideae subfamily, is an ecologically and commercially important plant resource widely distributed in the Indian subcontinent. Our study reports long-read PacBio HiFi sequencing and genome assembly of B. tulda. The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb, contig N50 of 35.69 Mb, and BUSCO score 99%. Repetitive elements constitute 63.31% of the genome. Functional annotation predicted 56,890 protein-coding genes, constituting 19.44% of the genome. This genome sequence will serve as an invaluable resource for future studies on the life history traits, phylogenomic analysis, comparative genomics, and targeted genome modification for important trait improvement of B. tulda.

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Journal
Scientific Data
Published
2026-02-04
DOI
https://doi.org/10.1038/s41597-026-06679-5
Primary Topic
Plant Taxonomy and Phylogenetics
Type
article
Field-Weighted Citation Impact
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article

Genome sequencing, de novo assembly and annotation of the commercially important bamboo, Bambusa tulda Roxb

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Genome sequencing, de novo assembly and annotation of the commercially important bamboo, Bambusa tulda Roxb

Oliver Rupp, Malay K. Das, Mridushree Basak, Annette Becker, Sonali Dey, Sutrisha Kundu, Sudeshna Bera
article en

Abstract

Bambusa tulda Roxb., a member of the Bambusoideae subfamily, is an ecologically and commercially important plant resource widely distributed in the Indian subcontinent. Our study reports long-read PacBio HiFi sequencing and genome assembly of B. tulda. The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb, contig N50 of 35.69 Mb, and BUSCO score 99%. Repetitive elements constitute 63.31% of the genome. Functional annotation predicted 56,890 protein-coding genes, constituting 19.44% of the genome. This genome sequence will serve as an invaluable resource for future studies on the life history traits, phylogenomic analysis, comparative genomics, and targeted genome modification for important trait improvement of B. tulda.

Scientific DataVol. 13(1)
Presidency University (IN), Justus-Liebig-Universität Gießen (DE)
Openalex Percentile: Top 76%
Plant Taxonomy and Phylogenetics
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