ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea
<ns3:p> <ns3:italic>Holothuria sanctori</ns3:italic> is a common species of sea cucumber found in the Mediterranean Sea and the Northeast Atlantic Ocean. It typically inhabits shallow rocky and sandy seabeds, where it plays a key ecological role as a sediment engineer processing organic matter ts and thereby contributing to nutrient cycling. As an edible species, <ns3:italic>H. sanctori</ns3:italic> is harvested in several countries. Although it is currently listed as a species of "Least Concern" on the IUCN Red List, the absence of a regulatory framework to prevent overexploitation poses a risk of population decline. Given its ecological significance and economic value <ns3:italic>, H. sanctori</ns3:italic> has become a focal point in both marine conservation and aquaculture research. The entirety of the genome sequence was assembled into 23 contiguous chromosomal pseudomolecules. This chromosome-level assembly encompasses 1.2 Gb, composed of 135 contigs and 46 scaffolds, with contig and scaffold N50 values of 19.9 Mb and 50.7 Mb, respectively. </ns3:p>
Authors
- Chiara Bortoluzzi
- Adama Ndar
- Alice Moussy
- Jean-Marc Aury
- Katerina Vasileiadou
- Karine Labadie
- Genoscope Sequencing Team
- Astrid Böhne
- Tereza Manousaki
- Rita Monteiro
- Grigorios Skouradakis
- Rosa Fernández
- Lola Demirdjian
- Thanos Dailianis
- Danae Karakasi
- Corinne Cruaud
- Patrick Wincker
- Pedro H. Oliveira
- Emmanouela Vernadou
- Nuria Escudero
Institutions
- SIB Swiss Institute of Bioinformatics (CH)
- Centre National de la Recherche Scientifique (FR)
- University of Crete (GR)
- Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR)
- Université Paris-Saclay (FR)
- Zoological Research Museum Alexander Koenig (DE)
- Genoscope (FR)
- Science and Technology Park of Crete (GR)
- CEA Paris-Saclay (FR)
- Hellenic Centre for Marine Research (GR)
- Institut de Biologia Evolutiva (ES)
Publication Details
- Journal
- Open Research Europe
- Published
- 2026-02-03
- DOI
- https://doi.org/10.12688/openreseurope.20841.3
- Primary Topic
- Echinoderm biology and ecology
- Type
- article
- Field-Weighted Citation Impact
- 0.00