Slot-BERT: Self-supervised object discovery in surgical video

Object-centric slot attention is a powerful framework for unsupervised learning of structured and explainable representations that can support reasoning about objects and actions, including in surgical video. However, current object-centric models either fail to reliably capture object dependencies in seconds-long video episodes that encompass surgical actions and tasks or are computationally too expensive for practical implementation. We introduce Slot-BERT, a slot attention model with a temporal slot transformer module to overcome these limitations. Our core innovations are: 1) A bidirectional transformer module that processes object-centric slot representations, enabling longer-range temporal coherence; 2) A slot-contrastive loss that further improves the representation by enforcing slot dissimilarity; 3) We evaluate Slot-BERT on real-world surgical video datasets from abdominal, cholecystectomy, and thoracic procedures, and on real and synthetic videos with everyday objects. Our method surpasses state-of-the-art object-centric approaches under unsupervised training achieving superior performance across these domains. We also demonstrate efficient zero-shot domain adaptation to data from diverse surgical specialties and databases.

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Publication Details

Journal
Medical Image Analysis
Published
2026-02-03
DOI
https://doi.org/10.1016/j.media.2026.103972
Primary Topic
Multimodal Machine Learning Applications
Type
article
Field-Weighted Citation Impact
0.00
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article

Slot-BERT: Self-supervised object discovery in surgical video

Matjaž Jogan, Guiqiu Liao, K. Nakahashi, Marcel Hussing et al.
Medical Image Analysis
Multimodal Machine Learning Applications
article

Slot-BERT: Self-supervised object discovery in surgical video

Matjaž Jogan, Guiqiu Liao, K. Nakahashi, Marcel Hussing, Eric eaton, Daniel A. Hashimoto, Kazuhiro Yasufuku, Amin Madani
article en

Abstract

Object-centric slot attention is a powerful framework for unsupervised learning of structured and explainable representations that can support reasoning about objects and actions, including in surgical video. However, current object-centric models either fail to reliably capture object dependencies in seconds-long video episodes that encompass surgical actions and tasks or are computationally too expensive for practical implementation. We introduce Slot-BERT, a slot attention model with a temporal slot transformer module to overcome these limitations. Our core innovations are: 1) A bidirectional transformer module that processes object-centric slot representations, enabling longer-range temporal coherence; 2) A slot-contrastive loss that further improves the representation by enforcing slot dissimilarity; 3) We evaluate Slot-BERT on real-world surgical video datasets from abdominal, cholecystectomy, and thoracic procedures, and on real and synthetic videos with everyday objects. Our method surpasses state-of-the-art object-centric approaches under unsupervised training achieving superior performance across these domains. We also demonstrate efficient zero-shot domain adaptation to data from diverse surgical specialties and databases.

Medical Image AnalysisVol. 110
University Health Network (CA), Toronto General Hospital (CA), Penn Center for AIDS Research (US), University of Pennsylvania (US)
Openalex Percentile: Top 70%
Multimodal Machine Learning Applications
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