Using semantic search to find publicly available gene-expression datasets
Our analysis code and a Web-based tool that enables others to use our methodology are available from https://github.com/srp33/GEO_NLP and https://github.com/srp33/GEOfinder3.0, respectively.
Authors
- A. R. Muir
- Xueping Yu (ORCID: https://orcid.org/0000-0002-1157-2501)
- Grace S. Brown
- James Wengler (ORCID: https://orcid.org/0000-0002-9641-4560)
- Aaron Joyce S. Fabelico
- Anna Tubbs
- Alexandra N. Millett
- Sanja Rogic
- Stephen Piccolo
- Amanda Warren
- Paul Pavlidis
Institutions
- Brigham Young University (US)
- University of British Columbia (CA)
- Texas A&M Health Science Center (US)
- Canada's Michael Smith Genome Sciences Centre (CA)
Publication Details
- Journal
- Bioinformatics
- Published
- 2026-01-29
- DOI
- https://doi.org/10.1093/bioinformatics/btag053
- Primary Topic
- Biomedical Text Mining and Ontologies
- Type
- article
- Field-Weighted Citation Impact
- 0.00