Metagenomic analysis revealed the presence of novel Actinomycetota “Candidatus Solincola uaceae” sp. nov., obtained from a hot spring
Metagenomic analysis of the hot spring led to the recovery of a high-quality metagenome-assembled genome (MAG), MPNR_HS_01, affiliated with the phylum Actinomycetota. Taxonomy analysis assigned the MAG to "Candidatus Solincola", clustering closely with "Candidatus Solincola tengchongensis". MPNR_HS_01 was 2.82 Mb in size, assembled into 27 contigs, with a G+C content of 63.4%, 49 tRNAs, 4 rRNAs, 98.7% completeness, and no detectable contamination. Functional annotation revealed the presence of complete glycolysis and nonoxidative pentose phosphate pathways, while the tricarboxylic acid cycle was incomplete. Notably, MPNR_HS_01 encoded Wood-Ljungdahl pathway, suggesting carbon assimilation. Energy conservation was supported by hydrogenases, heterodisulfide reductase, Rnf complex, and V-type ATPase. Stress adaptation traits included genes for heat shock proteins, proline biosynthesis, and ion transporters involved in osmotic homeostasis. Although lacking flagellar machinery, MPNR_HS_01 possessed type IV pili and genes associated with twitching motility. Secondary metabolite analysis identified a betalactone biosynthetic gene cluster. Genome-relatedness analyses showed that MPNR_HS_01 was distinct from "Candidatus Solincola" species, with both average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values falling below the established species threshold (95-96% ANI and 70% for dDDH), supporting its designation as a novel species, for which we propose the name "Candidatus Solincola uaceae" sp. nov.
Authors
- Kattia Núñez-Montero (ORCID: https://orcid.org/0000-0002-8629-5107)
- Patricio Arce‐Johnson (ORCID: https://orcid.org/0000-0003-3854-1286)
- Neeta Sharma
- Zhen‐Hao Luo (ORCID: https://orcid.org/0000-0003-2028-8788)
- Vania Ponce
- Manik Prabhu Narsing Rao
- Warunya Suksa
- Wen-Jun Li
- Jian-Yu Jiao
- Arinthip Thamchaipenet
Institutions
- Lovely Professional University (IN)
- University of Vienna (AT)
- Sun Yat-sen University (CN)
- Kasetsart University (TH)
- Universidad Autónoma de Chile (CL)
Publication Details
- Journal
- Scientific Reports
- Published
- 2026-02-02
- DOI
- https://doi.org/10.1038/s41598-026-37544-5
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Thailand Research Fund
- Kasetsart University
- National Research Council of Thailand
- Royal Golden Jubilee (RGJ) Ph.D. Programme