Metagenomic analysis revealed the presence of novel Actinomycetota “Candidatus Solincola uaceae” sp. nov., obtained from a hot spring

Metagenomic analysis of the hot spring led to the recovery of a high-quality metagenome-assembled genome (MAG), MPNR_HS_01, affiliated with the phylum Actinomycetota. Taxonomy analysis assigned the MAG to "Candidatus Solincola", clustering closely with "Candidatus Solincola tengchongensis". MPNR_HS_01 was 2.82 Mb in size, assembled into 27 contigs, with a G+C content of 63.4%, 49 tRNAs, 4 rRNAs, 98.7% completeness, and no detectable contamination. Functional annotation revealed the presence of complete glycolysis and nonoxidative pentose phosphate pathways, while the tricarboxylic acid cycle was incomplete. Notably, MPNR_HS_01 encoded Wood-Ljungdahl pathway, suggesting carbon assimilation. Energy conservation was supported by hydrogenases, heterodisulfide reductase, Rnf complex, and V-type ATPase. Stress adaptation traits included genes for heat shock proteins, proline biosynthesis, and ion transporters involved in osmotic homeostasis. Although lacking flagellar machinery, MPNR_HS_01 possessed type IV pili and genes associated with twitching motility. Secondary metabolite analysis identified a betalactone biosynthetic gene cluster. Genome-relatedness analyses showed that MPNR_HS_01 was distinct from "Candidatus Solincola" species, with both average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values falling below the established species threshold (95-96% ANI and 70% for dDDH), supporting its designation as a novel species, for which we propose the name "Candidatus Solincola uaceae" sp. nov.

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Journal
Scientific Reports
Published
2026-02-02
DOI
https://doi.org/10.1038/s41598-026-37544-5
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Metagenomic analysis revealed the presence of novel Actinomycetota “Candidatus Solincola uaceae” sp. nov., obtained from a hot spring

Kattia Núñez-Montero, Patricio Arce‐Johnson, Neeta Sharma, Zhen‐Hao Luo et al.
Scientific Reports
Genomics and Phylogenetic Studies
article

Metagenomic analysis revealed the presence of novel Actinomycetota “Candidatus Solincola uaceae” sp. nov., obtained from a hot spring

Kattia Núñez-Montero, Patricio Arce‐Johnson, Neeta Sharma, Zhen‐Hao Luo, Vania Ponce, Manik Prabhu Narsing Rao, Warunya Suksa, Wen-Jun Li, Jian-Yu Jiao, Arinthip Thamchaipenet
article en

Abstract

Metagenomic analysis of the hot spring led to the recovery of a high-quality metagenome-assembled genome (MAG), MPNR_HS_01, affiliated with the phylum Actinomycetota. Taxonomy analysis assigned the MAG to "Candidatus Solincola", clustering closely with "Candidatus Solincola tengchongensis". MPNR_HS_01 was 2.82 Mb in size, assembled into 27 contigs, with a G+C content of 63.4%, 49 tRNAs, 4 rRNAs, 98.7% completeness, and no detectable contamination. Functional annotation revealed the presence of complete glycolysis and nonoxidative pentose phosphate pathways, while the tricarboxylic acid cycle was incomplete. Notably, MPNR_HS_01 encoded Wood-Ljungdahl pathway, suggesting carbon assimilation. Energy conservation was supported by hydrogenases, heterodisulfide reductase, Rnf complex, and V-type ATPase. Stress adaptation traits included genes for heat shock proteins, proline biosynthesis, and ion transporters involved in osmotic homeostasis. Although lacking flagellar machinery, MPNR_HS_01 possessed type IV pili and genes associated with twitching motility. Secondary metabolite analysis identified a betalactone biosynthetic gene cluster. Genome-relatedness analyses showed that MPNR_HS_01 was distinct from "Candidatus Solincola" species, with both average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values falling below the established species threshold (95-96% ANI and 70% for dDDH), supporting its designation as a novel species, for which we propose the name "Candidatus Solincola uaceae" sp. nov.

Scientific ReportsVol. 16(1)
Lovely Professional University (IN), University of Vienna (AT), Sun Yat-sen University (CN), Kasetsart University (TH), Universidad Autónoma de Chile (CL)
Thailand Research Fund, Kasetsart University, National Research Council of Thailand, Royal Golden Jubilee (RGJ) Ph.D. Programme
Life in Land
Openalex Percentile: Top 70%
Genomics and Phylogenetic Studies
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