Engineering next‐generation crops through <scp>CRISPR</scp> ‐mediated horizontal gene transfer

Crops increasingly face overlapping stresses such as heat, drought, salinity, and pathogens that conventional breeding or genome editing rarely overcome in combination. To address this, we propose CRISPR-enabled horizontal gene transfer (CRISPR-HGT) as a programmable framework that recreates the evolutionary process by which plants historically acquired adaptive microbial genes. Microbial genes, refined under extreme environments, provide a naturally preadapted resource for multi-trait resilience. By integrating tools such as Cas12a, CasΦ, RNA-targeting, and dCas-based epigenome editors with AI-guided microbial gene discovery, CRISPR-HGT enables modular and inducible stress regulation. This approach shifts genome editing from allelic modification to evolution-guided design. We outline a conceptual pipeline spanning microbial gene mining to adaptive field deployment, highlighting the ecological, biosafety, and regulatory dimensions, from the European Union's cautious oversight to the UK's product-based framework. CRISPR-HGT thus introduces an evolution-informed paradigm for engineering crops that anticipate stress and sustain yield under climate uncertainty.

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Publication Details

Journal
New Phytologist
Published
2026-02-01
DOI
https://doi.org/10.1111/nph.70951
Primary Topic
CRISPR and Genetic Engineering
Type
article
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article

Engineering next‐generation crops through CRISPR ‐mediated horizontal gene transfer

Madhab Kumar Sen, Rajeev K. Varshney, Amrita Chakraborty, Amit Roy
New Phytologist
CRISPR and Genetic Engineering
article

Engineering next‐generation crops through CRISPR ‐mediated horizontal gene transfer

Madhab Kumar Sen, Rajeev K. Varshney, Amrita Chakraborty, Amit Roy
article en

Abstract

Crops increasingly face overlapping stresses such as heat, drought, salinity, and pathogens that conventional breeding or genome editing rarely overcome in combination. To address this, we propose CRISPR-enabled horizontal gene transfer (CRISPR-HGT) as a programmable framework that recreates the evolutionary process by which plants historically acquired adaptive microbial genes. Microbial genes, refined under extreme environments, provide a naturally preadapted resource for multi-trait resilience. By integrating tools such as Cas12a, CasΦ, RNA-targeting, and dCas-based epigenome editors with AI-guided microbial gene discovery, CRISPR-HGT enables modular and inducible stress regulation. This approach shifts genome editing from allelic modification to evolution-guided design. We outline a conceptual pipeline spanning microbial gene mining to adaptive field deployment, highlighting the ecological, biosafety, and regulatory dimensions, from the European Union's cautious oversight to the UK's product-based framework. CRISPR-HGT thus introduces an evolution-informed paradigm for engineering crops that anticipate stress and sustain yield under climate uncertainty.

New PhytologistVol. 249(6)
Murdoch University (AU), Czech University of Life Sciences Prague (CZ)
Openalex Percentile: Top 71%
CRISPR and Genetic Engineering
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Engineering next‐generation crops through <scp>CRISPR</scp> ‐mediated horizontal gene transfer — Madhab Kumar Sen, Rajeev K. Varshney, et al. · New Phytologist (2026) | TGRS Research Map | TGRS