A Reproducible Post-Valve-Replacement EHR Cohort for Comparative AI Studies
<b>Background/Objectives</b>: Valve replacement (VR) patients are at high risk of postoperative complications, but reproducible Electronic Health Record (EHR) benchmarks for evaluating sequential AI models in this setting are lacking. We develop a reproducible pipeline that extracts two EHR datasets from MIMIC-IV (a general-purpose and a predictive benchmark dataset) capturing perioperative histories, high-resolution time-series, and clinically motivated outcome labels. <b>Methods</b>: The cohort comprises 3890 VR patients with clinician-guided feature selection across diagnoses, procedures, laboratory measurements, medications, and physiological monitoring. As an exemplary use case, we define ICU readmission at first ICU discharge as a surrogate for postoperative risk and derive a predictive benchmark under strict label-leakage control. We then compare a Transformer model trained on tokenized longitudinal EHR sequences with Transformer and XGBoost baselines trained on aggregated feature statistics, and assess performance differences using paired statistical tests across validation splits. <b>Results</b>: ICU readmission stratified in-hospital and 100-day outcomes, including mortality, complications, and rehospitalization, confirming the clinical relevance of the prediction target. The sequential Transformer achieved 0.87 AUROC and 0.69 AUPRC. Corrected resampled <i>t</i>-tests confirm improved performance over the non-sequential Transformer, while the comparison with XGBoost indicates a favorable trend without conclusive evidence. <b>Conclusions</b>: Our findings suggest that leveraging longitudinal EHR sequences yields higher predictive performance than static feature summaries for postoperative risk prediction. The publicly released preprocessing pipeline and cohort-construction code enable researchers with MIMIC-IV access to reproduce the datasets and provide a robust benchmark for developing and comparing time-series models in post-valve replacement care.
Authors
- Adrian Lindenmeyer (ORCID: https://orcid.org/0000-0001-8977-5790)
- Malte Blattmann (ORCID: https://orcid.org/0000-0003-2282-0723)
- Mika Katalinic
- Thomas Neumuth
- Stefan Franke
- Daniel Schneider
Institutions
- Leipzig University (DE)
Publication Details
- Journal
- Diagnostics
- Published
- 2026-02-01
- DOI
- https://doi.org/10.3390/diagnostics16030447
- Primary Topic
- Machine Learning in Healthcare
- Type
- article
- Field-Weighted Citation Impact
- 0.00