A dramatic protein fold switch powers a bactericidal nanomachine

Fold switching, where a protein region interconverts between entirely distinct three-dimensional structures, is emerging as vital for certain protein functions. Here, we report a remarkable example in the F7 pyocin, a phage tail-like bactericidal nanomachine. Cryogenic electron microscopy and tomography reveal that a 163-residue segment of the central tail fiber undergoes a dramatic transition-from a trimeric α-helical coiled-coil to a triangular β-prism-upon binding to the bacterial cell surface. This massive fold switch remodels the tail tip, ejects the internal tape measure protein, and drives membrane puncture. Site-directed mutations that selectively destabilize the β-prism conformation completely abolish bactericidal activity without impairing particle assembly, implying that the energy released during this transition powers penetration. AlphaFold-based analyses further predict similar large-scale coiled-coil to β-prism switches in diverse non-contractile phage tails. This discovery reveals a sophisticated, ATP-independent strategy for microbial warfare and opens exciting possibilities for engineering next-generation bacteriocins to combat multidrug-resistant pathogens.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-29
DOI
https://doi.org/10.64898/2026.01.28.702463
Primary Topic
Bacteriophages and microbial interactions
Type
article
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article

A dramatic protein fold switch powers a bactericidal nanomachine

Shoichi Tachiyama, Annie Si Cong Li, Alan R. Davidson, Devlina Chakravarty et al.
bioRxiv (Cold Spring Harbor Laboratory)
Bacteriophages and microbial interactions
article

A dramatic protein fold switch powers a bactericidal nanomachine

Shoichi Tachiyama, Annie Si Cong Li, Alan R. Davidson, Devlina Chakravarty, Rajeev Kumar, Yao He, Z. Hong Zhou, Lauren Porter, Jun Liu, Xiaoying Cai
article en

Abstract

Fold switching, where a protein region interconverts between entirely distinct three-dimensional structures, is emerging as vital for certain protein functions. Here, we report a remarkable example in the F7 pyocin, a phage tail-like bactericidal nanomachine. Cryogenic electron microscopy and tomography reveal that a 163-residue segment of the central tail fiber undergoes a dramatic transition-from a trimeric α-helical coiled-coil to a triangular β-prism-upon binding to the bacterial cell surface. This massive fold switch remodels the tail tip, ejects the internal tape measure protein, and drives membrane puncture. Site-directed mutations that selectively destabilize the β-prism conformation completely abolish bactericidal activity without impairing particle assembly, implying that the energy released during this transition powers penetration. AlphaFold-based analyses further predict similar large-scale coiled-coil to β-prism switches in diverse non-contractile phage tails. This discovery reveals a sophisticated, ATP-independent strategy for microbial warfare and opens exciting possibilities for engineering next-generation bacteriocins to combat multidrug-resistant pathogens.

bioRxiv (Cold Spring Harbor Laboratory)
National Institutes of Health (US), California NanoSystems Institute (US), University of California, Los Angeles (US), University of Toronto (CA), United States National Library of Medicine (US), Yale University (US), National Heart, Lung, and Blood Institute (US)
Affordable and clean energy
Openalex Percentile: Top 75%
Bacteriophages and microbial interactions
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