A Vibe Coding Workflow for AI-Assisted Analysis and Visualization of Genbank Records of Pepper Infecting Viruses

Understanding and predicting epidemiological trends of plant viruses is essential for sustaining crop productivity and control strategies. The National Center for Biotechnology Information (NCBI) GenBank provides nucleotide sequences with metadata such as date, location, and host, offering valuable resources for research. However, GenBank lacks automated tools for visualizing temporal and spatial patterns. To address this limitation, we applied a vibe coding approach, a generative AI assisted method that enables non-programmers to process and visualize data efficiently. As a case study, we analyzed pepper (Capsicum spp.), a major East and Southeast Asian crop threatened by emerging viruses. Using vibe coding, we visualized reporting trends by country and year and mapped sequence variation and conserved regions of pepper-infecting viruses. This approach allowed rapid organization of large datasets and real-time utilization of newly deposited GenBank entries. NCBI-based plant virus analysis system provides automated analysis and visualization and is accessible at https://plantvirus-viewer.duckdns.org/.

Authors

Institutions

Publication Details

Journal
The Plant Pathology Journal
Published
2026-01-30
DOI
https://doi.org/10.5423/ppj.nt.10.2025.0154
Primary Topic
Plant Virus Research Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

A Vibe Coding Workflow for AI-Assisted Analysis and Visualization of Genbank Records of Pepper Infecting Viruses

Eseul Baek, Ju-Yeon Yoon, Jiwan Seo, Ho-Jong Ju
The Plant Pathology Journal
Plant Virus Research Studies
article

A Vibe Coding Workflow for AI-Assisted Analysis and Visualization of Genbank Records of Pepper Infecting Viruses

Eseul Baek, Ju-Yeon Yoon, Jiwan Seo, Ho-Jong Ju
article en

Abstract

Understanding and predicting epidemiological trends of plant viruses is essential for sustaining crop productivity and control strategies. The National Center for Biotechnology Information (NCBI) GenBank provides nucleotide sequences with metadata such as date, location, and host, offering valuable resources for research. However, GenBank lacks automated tools for visualizing temporal and spatial patterns. To address this limitation, we applied a vibe coding approach, a generative AI assisted method that enables non-programmers to process and visualize data efficiently. As a case study, we analyzed pepper (Capsicum spp.), a major East and Southeast Asian crop threatened by emerging viruses. Using vibe coding, we visualized reporting trends by country and year and mapped sequence variation and conserved regions of pepper-infecting viruses. This approach allowed rapid organization of large datasets and real-time utilization of newly deposited GenBank entries. NCBI-based plant virus analysis system provides automated analysis and visualization and is accessible at https://plantvirus-viewer.duckdns.org/.

The Plant Pathology JournalVol. 42(1)
Chung-Ang University (KR), Jeonbuk National University (KR)
Ministry of Science and ICT, South Korea, Jeonbuk National University
Openalex Percentile: Top 71%
Plant Virus Research Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.