Bayesian Models to Generate Small Area Estimates of Population Health: Tutorial for Using Rate Stabilizing Tools and Their Output

The demand for high-quality population health data at the local level calls for expanded tools for those working to enhance the health of communities across the country to easily calculate small area estimates. Statistical models that generate small area estimates often use Bayesian estimation techniques, which are computationally complex and not readily accessible to most public health professionals. We developed 2 tools to facilitate small area estimation. For ArcGIS Pro users, we developed the Rate Stabilizing Toolbox ArcGIS plugin (RSTbx), and for R users, we developed the Rate Stabilizing Tool R package (RSTr). In this tutorial, we demonstrate how to use these tools to calculate small area estimates and evaluate their reliability. We also demonstrate 3 key benefits from using either of these tools: (1) decreased number of geographic units with suppressed estimates, (2) flexibility to set the threshold for statistical reliability, and (3) credible intervals that can be used to identify statistically significant differences between geographic units. Additionally, both tools offer built-in age-standardization capabilities. We created census tract-level maps from North Carolina mortality data and Rhode Island hospitalization data to showcase the benefits of generating small area estimates with these tools. Rate Stabilizing Toolbox and Rate Stabilizing Tool for R are powerful tools that can be used to meet the demand for high-quality local-level data to inform public health programs and tailor health promotion activities to the needs of communities across the country.

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Journal
JMIR Public Health and Surveillance
Published
2026-01-30
DOI
https://doi.org/10.2196/83498
Primary Topic
demographic modeling and climate adaptation
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article
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Bayesian Models to Generate Small Area Estimates of Population Health: Tutorial for Using Rate Stabilizing Tools and Their Output

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JMIR Public Health and Surveillance
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Bayesian Models to Generate Small Area Estimates of Population Health: Tutorial for Using Rate Stabilizing Tools and Their Output

Joshua Tootoo, Jihyeon Kwon, Adam S. Vaughan, David DeLara, Justan T. Baker, ML Casper, Ruiyang Li, Ryan Zomorrodi, Harrison Quick
article en

Abstract

The demand for high-quality population health data at the local level calls for expanded tools for those working to enhance the health of communities across the country to easily calculate small area estimates. Statistical models that generate small area estimates often use Bayesian estimation techniques, which are computationally complex and not readily accessible to most public health professionals. We developed 2 tools to facilitate small area estimation. For ArcGIS Pro users, we developed the Rate Stabilizing Toolbox ArcGIS plugin (RSTbx), and for R users, we developed the Rate Stabilizing Tool R package (RSTr). In this tutorial, we demonstrate how to use these tools to calculate small area estimates and evaluate their reliability. We also demonstrate 3 key benefits from using either of these tools: (1) decreased number of geographic units with suppressed estimates, (2) flexibility to set the threshold for statistical reliability, and (3) credible intervals that can be used to identify statistically significant differences between geographic units. Additionally, both tools offer built-in age-standardization capabilities. We created census tract-level maps from North Carolina mortality data and Rhode Island hospitalization data to showcase the benefits of generating small area estimates with these tools. Rate Stabilizing Toolbox and Rate Stabilizing Tool for R are powerful tools that can be used to meet the demand for high-quality local-level data to inform public health programs and tailor health promotion activities to the needs of communities across the country.

JMIR Public Health and SurveillanceVol. 12
University of Minnesota (US), Rhode Island Department of Health (US), University of Illinois Chicago (US), National Center for Chronic Disease Prevention and Health Promotion (US), Comer Children's Hospital (US), Drexel University (US)
Openalex Percentile: Top 75%
demographic modeling and climate adaptation
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