Rare event detection by progressive clustering undersampling

Capturing rare events in severely imbalanced datasets is challenging, as the learning and optimization processes are often biased toward the majority class. To address this issue, this study explores various resampling techniques and introduces a novel method called Progressive Clustering Undersampling (PCU). This technique removes negative instances that are distant from positive ones. PCU was compared with eight common undersampling and two oversampling techniques, consistently outperforming them on highly imbalanced and noisy datasets. The workflow demonstrates that rare anomalies can be effectively predicted using unsupervised methods based on frequency-driven decision boundaries. Progressive clustering ultimately identifies clusters with the highest concentration of positive instances. These delineated clusters are then saved by supervised models and used in the preparatory phase before prediction. The proposed method produces two outputs: one optimized for a high F1-score and the other for high precision. Overall, this approach presents a promising solution for identifying rare anomalies in complex, imbalanced data environments.

Authors

Institutions

Publication Details

Journal
PLoS ONE
Published
2026-01-30
DOI
https://doi.org/10.1371/journal.pone.0340758
Primary Topic
Imbalanced Data Classification Techniques
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Rare event detection by progressive clustering undersampling

Elena Jolkver, Amr M. Abuzeid
PLoS ONE
Imbalanced Data Classification Techniques
article

Rare event detection by progressive clustering undersampling

Elena Jolkver, Amr M. Abuzeid
article en

Abstract

Capturing rare events in severely imbalanced datasets is challenging, as the learning and optimization processes are often biased toward the majority class. To address this issue, this study explores various resampling techniques and introduces a novel method called Progressive Clustering Undersampling (PCU). This technique removes negative instances that are distant from positive ones. PCU was compared with eight common undersampling and two oversampling techniques, consistently outperforming them on highly imbalanced and noisy datasets. The workflow demonstrates that rare anomalies can be effectively predicted using unsupervised methods based on frequency-driven decision boundaries. Progressive clustering ultimately identifies clusters with the highest concentration of positive instances. These delineated clusters are then saved by supervised models and used in the preparatory phase before prediction. The proposed method produces two outputs: one optimized for a high F1-score and the other for high precision. Overall, this approach presents a promising solution for identifying rare anomalies in complex, imbalanced data environments.

PLoS ONEVol. 21(1)
IU International University of Applied Sciences (DE)
Peace, Justice and strong institutions
Openalex Percentile: Top 73%
Imbalanced Data Classification Techniques
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.