Radiomic Analysis for Ki-67 Classification in Small Bowel Neuroendocrine Tumors

<b>Objective</b>: To analyze radiomic features extracted from CT images of small bowel neuroendocrine tumors and evaluate their association with Ki-67 expression. <b>Methods</b>: 128 small bowel NET primary and secondary lesions from 34 patients were analyzed. Manual segmentation of the lesions was conducted on portal-phase CT images using ITK-SNAP v. 4.0<sup>®</sup>, and 107 radiomic features were extracted using the PyRadiomics library. The lesions were categorized into two groups based on their Ki-67 index expression (≤1% and >1%). Correlation filtering reduced the set of 107 to 41 radiomic features. Inferential statistical analyses (<i>t</i>-test and Mann-Whitney U, following Shapiro-Wilk and Levene's tests) identified 19 significant features (<i>p</i> < 0.05) that were predominantly texture related. A ranking procedure further reduced these to eight top-performing variables across multiple selection methods (Information Gain, Gini, ANOVA, χ<sup>2</sup>). Five supervised Machine Learning models (Logistic Regression, Support Vector Machine (SVM), K-Nearest Neighbors (KNN), XGBoost, and Random Forest) were trained and validated using 5-fold cross-validation. The evaluation metrics employed included AUC, accuracy, precision, recall, F1 score, and a confusion matrix. <b>Results</b>: Random Forest exhibited the best overall performance (AUC = 0.80; F1 score = 0.813; Recall = 0.847). The model's low false negative rate (15.3%) suggests potential clinical utility in minimizing the risk of underestimating more aggressive lesions. <b>Conclusions</b>: Radiomics represents a promising frontier to identify patterns associated with histopathological markers. This study highlights its potential for non-invasive assessment of proliferative rate in small bowel neuroendocrine tumors, confirming the performance in the literature, and posing an interesting prospect for future research.

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Journal
Cancers
Published
2026-01-30
DOI
https://doi.org/10.3390/cancers18030463
Primary Topic
Neuroendocrine Tumor Research Advances
Type
article
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article

Radiomic Analysis for Ki-67 Classification in Small Bowel Neuroendocrine Tumors

Alessandro Gambella, Lorenzo Preda, Virginia Sambuceti, Chandra Bortolotto et al.
Cancers
Neuroendocrine Tumor Research Advances
article

Radiomic Analysis for Ki-67 Classification in Small Bowel Neuroendocrine Tumors

Alessandro Gambella, Lorenzo Preda, Virginia Sambuceti, Chandra Bortolotto, Federica Grillo, Alessandro Vanoli, Aurora Rita Puleri, Filippo Checchin, Davide Malerba
article en

Abstract

<b>Objective</b>: To analyze radiomic features extracted from CT images of small bowel neuroendocrine tumors and evaluate their association with Ki-67 expression. <b>Methods</b>: 128 small bowel NET primary and secondary lesions from 34 patients were analyzed. Manual segmentation of the lesions was conducted on portal-phase CT images using ITK-SNAP v. 4.0<sup>®</sup>, and 107 radiomic features were extracted using the PyRadiomics library. The lesions were categorized into two groups based on their Ki-67 index expression (≤1% and >1%). Correlation filtering reduced the set of 107 to 41 radiomic features. Inferential statistical analyses (<i>t</i>-test and Mann-Whitney U, following Shapiro-Wilk and Levene's tests) identified 19 significant features (<i>p</i> < 0.05) that were predominantly texture related. A ranking procedure further reduced these to eight top-performing variables across multiple selection methods (Information Gain, Gini, ANOVA, χ<sup>2</sup>). Five supervised Machine Learning models (Logistic Regression, Support Vector Machine (SVM), K-Nearest Neighbors (KNN), XGBoost, and Random Forest) were trained and validated using 5-fold cross-validation. The evaluation metrics employed included AUC, accuracy, precision, recall, F1 score, and a confusion matrix. <b>Results</b>: Random Forest exhibited the best overall performance (AUC = 0.80; F1 score = 0.813; Recall = 0.847). The model's low false negative rate (15.3%) suggests potential clinical utility in minimizing the risk of underestimating more aggressive lesions. <b>Conclusions</b>: Radiomics represents a promising frontier to identify patterns associated with histopathological markers. This study highlights its potential for non-invasive assessment of proliferative rate in small bowel neuroendocrine tumors, confirming the performance in the literature, and posing an interesting prospect for future research.

CancersVol. 18(3)
University of Pavia (IT), Azienda Ospedaliera S.Maria (IT), Policlinico San Matteo Fondazione (IT), Istituti di Ricovero e Cura a Carattere Scientifico (IT), University of Genoa (IT)
Life in Land
Openalex Percentile: Top 71%
Neuroendocrine Tumor Research Advances
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