Protein-only centromeric chromatin assembly streamlines human artificial chromosome formation

Human artificial chromosomes (HACs) are inherited through cell divisions alongside natural chromosomes, serving as tools for interrogating chromosomal elements and as vectors for large genetic cargoes (1-5). Despite recent progress (6-8), large (i.e., multiple Mb) HACs have not been reported. Further, HAC formation via epigenetic seeding of centromeric chromatin currently requires prior engineering of recipient human cells (6-8), hampering their potential deployment in many useful cell types. Here, we designed, built, and delivered to human cells a 2 Mb HAC construct that is ~3 times larger than the prior generation. We also report a robust epigenetic centromere seeding approach that initiates immediately upon delivery to the human cell cytoplasm and bypasses genetic engineering of target cells. The HACs are then faithfully inherited in the absence of selection. Thus, formation of functional centromeric chromatin in the same cell cycle of HAC delivery drives high efficiency HAC formation.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2026-01-29
DOI
https://doi.org/10.64898/2026.01.28.702397
Primary Topic
Chromosomal and Genetic Variations
Type
article
Field-Weighted Citation Impact
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article

Protein-only centromeric chromatin assembly streamlines human artificial chromosome formation

Shu-Cheng Chuang, John I. Glass, Ben E. Black, Gabriel J. Birchak et al.
bioRxiv (Cold Spring Harbor Laboratory)
Chromosomal and Genetic Variations
article

Protein-only centromeric chromatin assembly streamlines human artificial chromosome formation

Shu-Cheng Chuang, John I. Glass, Ben E. Black, Gabriel J. Birchak, Praveen Kumar Allu, Adam M. Phillippy, Guhan Kaliyaperumal Anbalagan, Daniel G. Gibson, Prakriti Kashyap
article en

Abstract

Human artificial chromosomes (HACs) are inherited through cell divisions alongside natural chromosomes, serving as tools for interrogating chromosomal elements and as vectors for large genetic cargoes (1-5). Despite recent progress (6-8), large (i.e., multiple Mb) HACs have not been reported. Further, HAC formation via epigenetic seeding of centromeric chromatin currently requires prior engineering of recipient human cells (6-8), hampering their potential deployment in many useful cell types. Here, we designed, built, and delivered to human cells a 2 Mb HAC construct that is ~3 times larger than the prior generation. We also report a robust epigenetic centromere seeding approach that initiates immediately upon delivery to the human cell cytoplasm and bypasses genetic engineering of target cells. The HACs are then faithfully inherited in the absence of selection. Thus, formation of functional centromeric chromatin in the same cell cycle of HAC delivery drives high efficiency HAC formation.

bioRxiv (Cold Spring Harbor Laboratory)
J. Craig Venter Institute (US), Translational Therapeutics (United States) (US), University of Pennsylvania (US)
Openalex Percentile: Top 73%
Chromosomal and Genetic Variations
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