First high-quality genome assembly of <i>Umbelopsis nana</i> isolated from forest soil

Species of the genus Umbelopsis are ubiquitous soil saprotrophic fungi known for their role in ecological nutrient cycling and biotechnological potential in lipid production. Here, we present the genome assembly of Umbelopsis sp. strain THIF13, which is characterized by its capability to produce carbonyl sulfide (COS). Using PacBio Sequel long-read data, a high-quality genome assembly was generated comprising 18 contigs totaling 27.2 Mb, which is larger than other Umbelopsis genomes, with an N50 of 1.77 Mb. Notably, 16 contigs were flanked by telomeric repeats at both ends. The assembly showed high completeness, with 98.1% complete Benchmarking Universal Single-Copy Orthologs (BUSCOs) and 11.15% repetitive sequences. Multi-locus phylogenetic analysis clearly identified the strain as Umbelopsis nana; thus, this study reports the first publicly available genome sequence for this species. Functional annotation with Funannotate predicted 9,068 genes. This genomic resource fills a gap in the Umbelopsis phylogeny and provides a foundation for elucidating the evolutionary and functional diversity of the genus.

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Journal
G3 Genes Genomes Genetics
Published
2026-01-29
DOI
https://doi.org/10.1093/g3journal/jkag022
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

First high-quality genome assembly of Umbelopsis nana isolated from forest soil

Javier F. Tabima, Yoko Katayama, Ryuka Iizuka, David S. Hibbett et al.
G3 Genes Genomes Genetics
Genomics and Phylogenetic Studies
article

First high-quality genome assembly of Umbelopsis nana isolated from forest soil

Javier F. Tabima, Yoko Katayama, Ryuka Iizuka, David S. Hibbett, Makoto Yoshida, Nozomu Watanabe, Tomohiro Suzuki
article en

Abstract

Species of the genus Umbelopsis are ubiquitous soil saprotrophic fungi known for their role in ecological nutrient cycling and biotechnological potential in lipid production. Here, we present the genome assembly of Umbelopsis sp. strain THIF13, which is characterized by its capability to produce carbonyl sulfide (COS). Using PacBio Sequel long-read data, a high-quality genome assembly was generated comprising 18 contigs totaling 27.2 Mb, which is larger than other Umbelopsis genomes, with an N50 of 1.77 Mb. Notably, 16 contigs were flanked by telomeric repeats at both ends. The assembly showed high completeness, with 98.1% complete Benchmarking Universal Single-Copy Orthologs (BUSCOs) and 11.15% repetitive sequences. Multi-locus phylogenetic analysis clearly identified the strain as Umbelopsis nana; thus, this study reports the first publicly available genome sequence for this species. Functional annotation with Funannotate predicted 9,068 genes. This genomic resource fills a gap in the Umbelopsis phylogeny and provides a foundation for elucidating the evolutionary and functional diversity of the genus.

G3 Genes Genomes Genetics
Clark University (US), Utsunomiya University (JP), Independent Administrative Institution National Research Institute for Cultural Properties (JP), Tokyo University of Agriculture and Technology (JP)
Life in Land
Openalex Percentile: Top 74%
Genomics and Phylogenetic Studies
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