Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

We present a systematic assessment of the last generation of RNA force fields to reproduce the structures and dynamics of ligand−RNA complexes. Our comprehensive analysis helped not only to define the more reliable force field to represent complex structures but also suggests details that can be improved and provide a critical analysis of the quality of experimental structures in complex systems that are expected to be very flexible and environment dependent.

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Publication Details

Journal
Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona)
Published
2025-10-31
Primary Topic
RNA and protein synthesis mechanisms
Type
article
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article

Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

Israel Serrano Chacón, Federica Battistini, Modesto Orozco López, Paula Fernández Migens
Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona)
RNA and protein synthesis mechanisms
article

Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes

Israel Serrano Chacón, Federica Battistini, Modesto Orozco López, Paula Fernández Migens
article en

Abstract

We present a systematic assessment of the last generation of RNA force fields to reproduce the structures and dynamics of ligand−RNA complexes. Our comprehensive analysis helped not only to define the more reliable force field to represent complex structures but also suggests details that can be improved and provide a critical analysis of the quality of experimental structures in complex systems that are expected to be very flexible and environment dependent.

Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona)
Openalex Percentile: Top 34%
RNA and protein synthesis mechanisms
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Success and Limitations of Current Force Fields for the Description of RNA–Ligand Complexes — Israel Serrano Chacón, Federica Battistini, et al. · Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona) (2025) | TGRS Research Map | TGRS